CK937797

Overview
NameCK937797
Unique NameCK937797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937797 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 53/140 (37.86%), Postives = 75/140 (53.57%), Query Frame = 2
Query:  287 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPV 703
            F+  QSF+ A   Y   GF    T  D  +EI AF AHV  +T               +CY +E++  +  YCD S K  +PC PG +YYGRG + I WN+NYG  G+ +  D L  P+ + Q+ T++F+ A+W WM  V
Sbjct:  109 FYTRQSFLNAARSYS--GFANDRTNDDSKREIAAFFAHVTHETG-------------HMCYINEINGANMDYCDKSNKQ-WPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNV 232          
BLAST of CK937797 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 53/149 (35.57%), Postives = 76/149 (51.01%), Query Frame = 2
Query:  287 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSXPSAHDA 733
            F+   +F++A   Y   GF   G+++   +EI AF AH   +T                CY  E++ S +YCD + K  +PC  G +YYGRG + I WNYNYG  G A+  D L  P  + ++A +AF+AA+W WM  V    P    A
Sbjct:   94 FYTRSAFLSAVKGYP--GFAHGGSQVQGKREIAAFFAHATHETG-------------HFCYISEINKSNAYCDPT-KRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVPQGFGA 226          
BLAST of CK937797 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.860e-19
Identity = 53/151 (35.10%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  287 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSXPSAHDAFV 739
            F+   +F++A   Y   GF   GT+++  +EI AF AHV  +T                CY  E++ S +YCD S +  +PC  G +YYGRG + I WNYNYG  G  +  + L  P  + Q+A +AF+ A+W WM  V    P    A +
Sbjct:  105 FYTRSAFLSAVNAYP--GFAHGGTEVEGKREIAAFFAHVTHETG-------------HFCYISEINKSNAYCDASNRQ-WPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMPQGFGATI 239          
BLAST of CK937797 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.068e-19
Identity = 56/165 (33.94%), Postives = 81/165 (49.09%), Query Frame = 2
Query:  236 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSXPSAHD 730
            F      RN     A GF+ Y +FI A   +   GFGTTG    + KEI AF      +T+ G  ++  GP A G C+  E +                  G+ +YGRG I +    NY   G+A+  DL+N+P+ +  +AT++F+ AIW WMT  + + PS HD
Sbjct:   28 FNEMLKNRNDDRCPAKGFYTYDAFIAAANSFP--GFGTTGDDTARKKEIAAFFGQTSHETTGG-SLSADGPFAGGYCFVREGNQM----------------GSGFYGRGPIQLTGQSNYDLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMT-AQGNKPSCHD 172          
BLAST of CK937797 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.581e-18
Identity = 51/149 (34.23%), Postives = 76/149 (51.01%), Query Frame = 2
Query:  284 GFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSXPSAHD 730
            GF+ Y +FI A   +    F TTG+   + +E+ AFLA    +T+ G+  A  GP                         Y     ++Y+GRG I I +NYNYGA G+A+  DLL +P+ +  + T+ F+ A+W WMTP +   PS+HD
Sbjct:   18 GFYTYDAFIAAAKSFP--AFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGP-------------------------YELGSTSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTP-QSPKPSSHD 138          
BLAST of CK937797 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.814e-18
Identity = 45/123 (36.59%), Postives = 63/123 (51.22%), Query Frame = 2
Query:  341 FGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPS--QSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPV 703
            FG  G+  D  +EI AF AH+  +T+              LC+  E       +YCD      YPC  G +YYGRG + + WNYNY   G+A+  D L +PE +  +   +F+AA+W WMT V
Sbjct:  126 FGNEGSSDDNKREIAAFFAHISHETT-------------NLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNV 235          
BLAST of CK937797 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 54/168 (32.14%), Postives = 79/168 (47.02%), Query Frame = 2
Query:  236 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSXPSAHDAFV 739
            F      RN     A GF+ Y +FI A   +   GFGT+G    + KEI AF      +T+ G    +  P   G C+  +   S                   YYGRG I +    NY   G A++ DL+N+P+ +  +AT++F+ AIW WMTP + + PS+HD  +
Sbjct:   36 FNEMLKNRNDGRCPANGFYTYDAFIAAANSFP--GFGTSGDDTARRKEIAAFFGQTSHETTGGS--LSAEPFTGGYCFVRQNDQSD-----------------RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLVATDATISFKTAIWFWMTP-QDNKPSSHDVII 181          
BLAST of CK937797 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17
Identity = 50/141 (35.46%), Postives = 71/141 (50.35%), Query Frame = 2
Query:  287 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVK 706
            F+   SFI A   +    F  + T+    +EI    AH   +T                CY  E++  S+ YCD++ +  YPC PG  Y+GRG I + WNYNYGA G++L  +LL  PE +  N T+AF   +W WM  V+
Sbjct:   97 FYTRDSFINAANTFP--NFANSVTR----REIATMFAHFTHETG-------------HFCYIEEINGASRDYCDENNRQ-YPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVR 217          
BLAST of CK937797 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.878e-17
Identity = 54/168 (32.14%), Postives = 78/168 (46.43%), Query Frame = 2
Query:  236 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSXPSAHDAFV 739
            F      RN     A GF+ Y +FI A   +   GFGTTG    + KEI AF      +T+ G    +  P   G C+  +   S                   YYGRG I +    NY   G A+  +L+N+P+ +  +AT++F+ AIW WMTP + + PS+HD  +
Sbjct:   36 FNEMLKNRNDGRCPANGFYTYDAFIAAANSFP--GFGTTGDDTARRKEIAAFFGQTSHETTGGS--LSAEPFTGGYCFVRQNDQSD-----------------RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLVATDATISFKTAIWFWMTP-QDNKPSSHDVII 181          
BLAST of CK937797 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.925e-16
Identity = 47/137 (34.31%), Postives = 72/137 (52.55%), Query Frame = 2
Query:  287 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSP-SQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWM 694
            F+   +F+ A   Y   GFGT  T  D+ +EI A+ AHV  +T               LCY  E    + +YC +S +Y  PC P  EY+GRG + + WNYNY   G+ L  D LN P+ + ++  ++F+ ++W W+
Sbjct:   71 FYTRSNFLEAVSAYP--GFGTKCTDEDRKREIAAYFAHVTHETG-------------HLCYIEERDGHANNYCQESQQY--PCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          
The following BLAST results are available for this feature:
BLAST of CK937797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
CHI4_ORYSJ1.090e-1937.86Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE1.424e-1935.57Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE1.860e-1935.10Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIB_SOLLC7.068e-1933.94Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIT_AVESA4.581e-1834.23Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHIP_BETVU7.814e-1836.59Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIP_TOBAC1.021e-1732.14Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI4_BRANA2.274e-1735.46Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIQ_TOBAC3.878e-1732.14Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIT_DIOJA1.925e-1634.31Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004481_H07 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IIIF_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937797 ID=CK937797; Name=CK937797; organism=Citrus sinensis; type=EST; length=739bp
AGGGAGATCTGGTGAGAACGAGAAAATGAAGATGAAGAATGGCAGTGTGG
CAATGACACTGACAGTGGCACTAGTACTGGCACTGGCAGTGAGTTTGGCA
AATGGAGATGAATCAGAGAAGGTGATAGTGAAGAAGTTGAAGGGGAAAAA
AGTTTGCATAAAAGGGTGGGAGTGCCCAACATGGTCGAAATTCTGCTGTA
ACGAGACGATATCAGACTATTTCCAGGTTTACCAGTTTGAGAATTTCTTC
TCGAAAAGGAACACGCCGGTGGCACATGCCGTGGGATTCTGGGATTATCA
GTCTTTCATTACTGCCACCGTCAAATATCAGCCCCTCGGCTTCGGTACCA
CCGGTACTAAGCTTGATAAGATGAAGGAGATTTGCGCTTTTCTTGCCCAC
GTGGGCTGCAAGACCTCTTGTGGATATGGAGTGGCCACTGGAGGACCATT
GGCCTGGGGACTTTGCTACAACCATGAAATGAGCCCCAGTCAGTCATATT
GTGATGATTCCTACAAATACACATATCCCTGCACCCCTGGAGCTGAGTAC
TATGGCCGAGGTGCTATACCTATATACTGGAACTATAACTATGGAGCCAC
TGGGGAAGCATTGAAGGCAGATCTGTTGAATCATCCCGAATACATTGAGC
AGAATGCTACCCTTGCCTTTGAGGCTGCAATTTGGAAGTGGATGACCCCA
GTCAAGAAATCNNNGCCTTCAGCCCATGATGCCTTTGTT
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