CK937788

Overview
NameCK937788
Unique NameCK937788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: P2C10_ORYSJ (Probable protein phosphatase 2C 10 OS=Oryza sativa subsp. japonica GN=Os02g0149800 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.056e-20
Identity = 82/243 (33.74%), Postives = 110/243 (45.27%), Query Frame = 3
Query:   90 QNENVRYGLSSMQGWRATMEDAHAAYPD-LDSST-SFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQ---VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDI 803
            +N    YG +S  G RA+MED +    D +D  T   FGV+DGHGG   A++  ++L   ++KH                                        KF   I+  I      E  +H D   SE       H   +GSTA  AI+   +L+VAN GDSR V+ R G A+ +S+DHKPD   E+ RI  AGGF+      RV G L ++RA GD      K L   KQ V A+P+I
Sbjct:   77 ENGKFSYGYASAPGKRASMEDFYETRIDGVDGETIGLFGVFDGHGGARAAEYVKQHLFSNLIKHP---------------------------------------KFISDIKSAI-----AETYNHTD---SEFLKAESSHTRDAGSTASTAILVGDRLLVANVGDSRAVVCRGGDAIAVSRDHKPDQSDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGD------KLL---KQYVVADPEI 263          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: P2C78_ARATH (Probable protein phosphatase 2C 78 OS=Arabidopsis thaliana GN=At5g59220 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.909e-20
Identity = 80/222 (36.04%), Postives = 108/222 (48.65%), Query Frame = 3
Query:  105 RYGLSSMQGWRATMEDAHAAYPDLD------SSTSFF--GVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG---FIQVGRVNGSLNLARAIGD 737
            +YG++S+ G R  MEDA A +P         SST F   GVYDGHG   VA  C + LH+ V + E  +  D   S  ++F RMD  +        +A+  D   K    ++                       P  D      GSTA V+++  ++++VAN GDSR VL R G+A+ LS DHKPD   E DRI  AGG   +    RV G L ++RAIGD
Sbjct:  111 KYGVASVCGRRREMEDAVAVHPFFSRHQTEYSSTGFHYCGVYDGHGCSHVAMKCRERLHELV-REEFEADADWEKSMARSFTRMDMEV--------VALNADGAAKCRCELQR----------------------PDCD----AVGSTAVVSVLTPEKIIVANCGDSRAVLCRNGKAIALSSDHKPDRPDELDRIQAAGGRVIYWDGPRVLGVLAMSRAIGD 297          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: P2C27_ARATH (Probable protein phosphatase 2C 27 OS=Arabidopsis thaliana GN=At2g33700 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.033e-19
Identity = 72/225 (32.00%), Postives = 104/225 (46.22%), Query Frame = 3
Query:  105 RYGLSSMQGWRATMEDAHAAYPDL----------DSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFK 749
            R G  + QG +  MED H    DL           S  +F+GV+DGHGG   A F  K + + +++  ++    +  + + AFL+ D                                         F D +S +         +SG+TA  A I  ++L++ANAGD R VL R+G+A+ LSKDHKP+   EK RI K GG +  G +NG L++ARAIGD   K
Sbjct:   84 RSGSCAEQGAKQFMEDEHICIDDLVNHLGAAIQCSSLGAFYGVFDGHGGTDAAHFVRKNILRFIVEDSSFPLC-VKKAIKSAFLKADY---------------------------------------EFADDSSLD--------ISSGTTALTAFIFGRRLIIANAGDCRAVLGRRGRAIELSKDHKPNCTAEKVRIEKLGGVVYDGYLNGQLSVARAIGDWHMK 260          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: P2C22_ARATH (Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.762e-19
Identity = 75/250 (30.00%), Postives = 120/250 (48.00%), Query Frame = 3
Query:  105 RYGLSSMQGWRATMEDAHAAYPDLDSS----------TSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGD--VEFKLNKSLPAEKQIVTANPDISTIEL 818
            R G  S  G R++MEDA+    +   S          ++F+GV+DGHGGK  A+F   ++ + +++ + + + ++      AFL+ D                                         F +  S +G  +      SG+TA  AI+  + LVVANAGD R VLSR+G+A+ +S+DHKP    E+ RI  +GG +  G +NG LN+ARA+GD  +E    K   ++   + A P++ T +L
Sbjct:   89 RSGAWSDIGSRSSMEDAYLCVDNFMDSFGLLNSEAGPSAFYGVFDGHGGKHAAEFACHHIPRYIVEDQEFPS-EINKVLSSAFLQTDTA---------------------------------------FLEACSLDGSLA------SGTTALAAILFGRSLVVANAGDCRAVLSRQGKAIEMSRDHKPMSSKERRRIEASGGHVFDGYLNGQLNVARALGDFHMEGMKKKKDGSDCGPLIAEPELMTTKL 292          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: P2C57_ORYSJ (Probable protein phosphatase 2C 57 OS=Oryza sativa subsp. japonica GN=Os06g0597200 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.126e-19
Identity = 75/247 (30.36%), Postives = 111/247 (44.94%), Query Frame = 3
Query:  102 VRYGLSSMQGWRATMEDAHAAYPDL----------DSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKS------LPAEKQIVTAN 794
            VR G  +  G R TMED      +L          D  ++F+GV+DGHGGK  A F    L + +++ E +   ++  +   AFL+ D            A   D     S +                                  SG+TA  A++  + L+VANAGD R VL  +G+A+ +S+DHKP    EK RI  +GG++  G +NG LN+ARAIGD   +  K+      L AE +++  N
Sbjct:   66 VRSGGWADIGSRHTMEDVFICSDNLMKEFGVESFEDGPSAFYGVFDGHGGKHAADFVCSNLARFIVEDEDFPR-EIEKALSSAFLQTD------------AAFADACSVNSSL---------------------------------ASGTTALAALVVGRSLLVANAGDCRAVLCCRGKAIEMSRDHKPSCNREKVRIEASGGYVYDGYLNGQLNVARAIGDWHMEGMKACDGLGPLSAEPEVMIRN 266          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: P2C52_ORYSJ (Probable protein phosphatase 2C 52 OS=Oryza sativa subsp. japonica GN=Os05g0587100 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.126e-19
Identity = 79/252 (31.35%), Postives = 114/252 (45.24%), Query Frame = 3
Query:   78 SEDGQNENVRYGLSSMQGWRATMEDAHAAYPDL--DSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQ---VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIEL 818
            SEDG    +  G SS +G RA+MED +        D   S FG++DGHGG   A++  ++L + ++KH  +                           +LAI        S  ++         E++ H DD                GSTA  A++    L VAN GDSR V+S+ G+A+ LS+DHKP+   E+ RI  AGG +      RV G L ++RA G      N+ L   KQ V A+P+I   E+
Sbjct:  223 SEDGF---LSCGYSSFRGKRASMEDFYDIKSSKIDDKQISLFGIFDGHGGSRAAEYLKEHLFENLMKHPEFMTNT-----------------------KLAISETYKKTDSEFLDS--------ESHTHRDD----------------GSTASTAVLVGNHLYVANVGDSRAVISKAGKAIALSEDHKPNRSDERKRIESAGGVVMWAGTWRVGGVLAMSRAFG------NRLL---KQFVVADPEIQEQEI 415          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: P2C51_ORYSJ (Probable protein phosphatase 2C 51 OS=Oryza sativa subsp. japonica GN=Os05g0572700 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.695e-19
Identity = 87/266 (32.71%), Postives = 115/266 (43.23%), Query Frame = 3
Query:  102 VRYGLSSMQGWRATMEDAHAAYPDLDSSTS---------------FFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRG------WRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGP----TSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIE 815
            V +G  S+ G R  MEDA A      +ST                FF VYDGHGG  VA+ C K +H              V  A++  LR    +RGQ        W+E  +      +  G + G +                +   P  D   P    T GSTA VA++  +++VVAN GDSR VLSR G AL LS DHKPD   E +R+  AGG +      RV G L  +R+IGD            K  V+A P++  +E
Sbjct:   76 VSHGSVSVIGRRREMEDAVAIERTFMASTGDGAGAIRGGGEGEEDFFAVYDGHGGSRVAEACRKRMH--------------VVLAEEVSLRR---LRGQSASGGDVRWKEAMLAS--FARMDGEVVGSV----------------AAAAPRVDGTEPSGFRTVGSTAVVAVVGRRRIVVANCGDSRAVLSRGGVALPLSTDHKPDRPDELERVEAAGGRVINWNGYRVLGVLATSRSIGDYYL---------KPFVSAEPEVRVVE 297          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: P2C71_ARATH (Probable protein phosphatase 2C 71 OS=Arabidopsis thaliana GN=At5g24940 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.744e-19
Identity = 75/244 (30.74%), Postives = 109/244 (44.67%), Query Frame = 3
Query:   90 QNENVRYGLSSMQGWRATMEDAHAAYPD-LDSS-TSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMD-EMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQ---VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDI 803
            QN    YG +S  G R++MED      D +D      FGV+DGHGG   A++  ++L   ++ H  + + D  ++   A+   D E+++ +                                N H  D               +GSTA  AI+   +L+VAN GDSR V+ R G A  +S+DHKPD   E++RI  AGGF+      RV G L ++RA GD            KQ V A+P+I
Sbjct:   28 QNGKFSYGYASSAGKRSSMEDFFETRIDGIDGEIVGLFGVFDGHGGSRAAEYVKRHLFSNLITHPKFIS-DTKSAIADAYTHTDSELLKSE--------------------------------NSHTRD---------------AGSTASTAILVGDRLLVANVGDSRAVICRGGNAFAVSRDHKPDQSDERERIENAGGFVMWAGTWRVGGVLAVSRAFGD---------RLLKQYVVADPEI 214          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: P2C07_ARATH (Protein phosphatase 2C 7 OS=Arabidopsis thaliana GN=HAB2 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 78/233 (33.48%), Postives = 109/233 (46.78%), Query Frame = 3
Query:  108 YGLSSMQGWRATMEDAHAAYP-------------------DLDSSTS-FFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGRVNGSLNLARAIGD 737
            +G  S+ G R+ MEDA  A P                    L   TS FFGVYDGHGG  VA +C   +H  + +         +   ++   R +     Q  W ++ +  D   K    ++G I  P  G ++    +  S E         T GSTA VA++    ++V+N GDSR VL R   ++ LS DHKPD E E  RI KAGG +   Q  RV+G L ++R+IGD
Sbjct:  189 WGTISICGGRSEMEDAVRALPHFLKIPIKMLMGDHEGMSPSLPYLTSHFFGVYDGHGGAQVADYCHDRIHSALAEE--------IERIKEELCRRNTGEGRQVQWEKVFV--DCYLKVDDEVKGKINRPVVGSSDRMVLEAVSPE---------TVGSTAVVALVCSSHIIVSNCGDSRAVLLRGKDSMPLSVDHKPDREDEYARIEKAGGKVIQWQGARVSGVLAMSRSIGD 402          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: PPM1K_MOUSE (Protein phosphatase 1K, mitochondrial OS=Mus musculus GN=Ppm1k PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.492e-18
Identity = 80/247 (32.39%), Postives = 115/247 (46.56%), Query Frame = 3
Query:   96 ENVRYGLSSMQGWRATMEDAHAAYPDLDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDK-QLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGR--VNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIEL 818
            ENV  G +S+ G R   ED    +  L     +F VYDGHGG A A FC  ++ + V+        DL T    AFL +D+                                           + S     +D    TSG+TA VA++RD  +LVVA+ GDSR +L RKG+ + L+ DH P+ + EK+RI K GGF+    +G+  VNG L + R+IGD++ K +         V A P+ + I+L
Sbjct:   93 ENV--GCASLIGKRKENEDRFG-FAQLTEEVLYFAVYDGHGGPAAADFCHTHMEKCVMDLLPREK-DLETVLTLAFLEIDKA------------------------------------------FASYAHLSADASLLTSGTTATVALLRDGVELVVASVGDSRALLCRKGKPMKLTTDHTPERKDEKERIKKFGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKASG--------VIAEPETTRIKL 285          
The following BLAST results are available for this feature:
BLAST of CK937788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
P2C10_ORYSJ6.056e-2033.74Probable protein phosphatase 2C 10 OS=Oryza sativa... [more]
P2C78_ARATH7.909e-2036.04Probable protein phosphatase 2C 78 OS=Arabidopsis ... [more]
P2C27_ARATH1.033e-1932.00Probable protein phosphatase 2C 27 OS=Arabidopsis ... [more]
P2C22_ARATH1.762e-1930.00Probable protein phosphatase 2C 22 OS=Arabidopsis ... [more]
P2C57_ORYSJ5.126e-1930.36Probable protein phosphatase 2C 57 OS=Oryza sativa... [more]
P2C52_ORYSJ5.126e-1931.35Probable protein phosphatase 2C 52 OS=Oryza sativa... [more]
P2C51_ORYSJ6.695e-1932.71Probable protein phosphatase 2C 51 OS=Oryza sativa... [more]
P2C71_ARATH8.744e-1930.74Probable protein phosphatase 2C 71 OS=Arabidopsis ... [more]
P2C07_ARATH1.142e-1833.48Protein phosphatase 2C 7 OS=Arabidopsis thaliana G... [more]
PPM1K_MOUSE1.492e-1832.39Protein phosphatase 1K, mitochondrial OS=Mus muscu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004482_A08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937788 ID=CK937788; Name=CK937788; organism=Citrus sinensis; type=EST; length=839bp
GGGGAGATCTCATTATCTCTCTGCTCAAAGTAAAGAAAATGGGGGTATAT
CTGAGCACCCCCAAGACTGAGAAGTTCTCGGAGGATGGTCAAAATGAGAA
TGTTCGATATGGATTGTCGTCGATGCAGGGGTGGCGTGCGACCATGGAAG
ATGCTCATGCAGCTTATCCAGATTTGGACAGTTCTACATCTTTCTTTGGT
GTTTATGATGGCCACGGTGGTAAAGCAGTGGCCAAATTTTGTGCCAAGTA
TCTTCACCAGCAGGTGCTCAAACATGAAGCTTATTCAGCTGGAGATTTAG
TCACTTCAGCACAGAAAGCTTTTCTCAGAATGGATGAGATGATGCGTGGA
CAAAGGGGATGGAGAGAATTAGCTATACTGGGAGATAAAATGGACAAGTT
TTCTGGCATGATTGAGGGGTTCATATGGTCTCCTAAGGGTGGTGAAGCCA
ATGATCATTTTGACGATTGGACATCGGAGGAGGGTCCTCACTCAGATTTT
CATGGACCAACTTCTGGAAGTACAGCTTGCGTAGCAATCATTAGAGACAA
GCAACTCGTGGTTGCAAATGCTGGTGATTCTCGTTGTGTGTTATCGAGGA
AGGGCCAGGCACTTAATCTATCTAAAGACCATAAGCCTGATCTTGAGGTT
GAGAAAGATAGAATTCTCAAAGCTGGTGGTTTTATACAAGTTGGACGTGT
TAATGGAAGTTTAAATTTGGCGAGAGCTATTGGAGATGTGGAGTTCAAGC
TAAACAAAAGTTTGCCTGCTGAAAAACAGATTGTGACTGCCAATCCTGAT
ATAAGTACTATTGAACTTTTGTGATGACGATGAGTTTCT
back to top