CK937788

Overview
NameCK937788
Unique NameCK937788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: PPM1L_BOVIN (Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.154e-17
Identity = 75/255 (29.41%), Postives = 116/255 (45.49%), Query Frame = 3
Query:   72 KFSEDGQNENVRYGLSSMQGWRATMEDAHAAYPDLDSST--SFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRK-GQALNLSKDHKPDLEVEKDRILKAGGFIQVG---RVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIEL 818
            +FS+  + ++    + S+QG R  MED      DL + T  S FG++DGHGG+  A++    L + + +H      D     + + L    ++  Q     L+I  + ++K +   +                                +G+T  +A++ DK L VAN GDSR VL  K G A+ LS DHKP    E+ RI +AGGFI      RV G L ++R++GD   K          +V  +PDI T +L
Sbjct:   81 EFSKTWEFKSHNVAVYSIQGRRDHMEDRFEVLMDLANKTHPSIFGIFDGHGGETAAEYVKSRLPEALKQH----LQDYEKDKENSVLSYQTILEQQI----LSIDREMLEKLTVSYD-------------------------------EAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLK-------NLNVVIPDPDILTFDL 289          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: PP2C4_YEAST (Protein phosphatase 2C homolog 4 OS=Saccharomyces cerevisiae GN=PTC4 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.154e-17
Identity = 87/283 (30.74%), Postives = 120/283 (42.40%), Query Frame = 3
Query:   39 MGVYLSTPKTEKFSEDGQNENVRYG----------LSSMQGWRATMEDAHAAY------------PDLDS----STSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFS---GMIEGFIWSPKGGEANDHFDDW--TSEEGPHSDFHGPTSGSTACVA-IIRDKQLVVANAGDSRCVLSRKGQALN-LSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVT 788
            MG  LS P TEK  E  + +N +            + SMQG+R T EDAH               P +D     S + F V+DGHGG   +KF +   H +     +   G+      K      E           +   +   KF      +EG +        +  F D     +E  +  F   + GSTA VA II ++ L VAN GDSRC+LS K   +  +S DHKP    E  RI   GG + +GRV G L L+RA  D +FK   + P  +  +T
Sbjct:    1 MGQLLSHPLTEKTIEYNEYKNNQASTGIVPRFYNCVGSMQGYRLTQEDAHLIRNENSVVYVRFFNPFIDKYETLSLNVFAVFDGHGGDDCSKFLSGGRHHRDGNGSSNGNGEPNAGLIKWIAYSFE------NHHYTSTTNNDSSKFKRSFNTLEGLV--------SQIFKDAFILQDEELYRHFANSSCGSTAVVACIINEESLYVANCGDSRCILSSKSNGIKTMSFDHKPQHIGELIRINDNGGTVSLGRVGGVLALSRAFSDFQFKRGVTYPHRRTKLT 269          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: P2C76_ARATH (Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 74/245 (30.20%), Postives = 110/245 (44.90%), Query Frame = 3
Query:  111 GLSSMQGWRATMEDAHAAYPDLDSST------SFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQ---VGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIEL 818
            G  S +G R+TMED +    D+ +ST        FG++DGHGG   A++  ++L   ++KH  +   D   +  + + + D           +A L  + D +                    DD                GSTA  A++    L VAN GDSR ++S+ G+A+ LS DHKP+   E+ RI  AGG I      RV G L ++RA G      N+ L   KQ V A P+I  +E+
Sbjct:  103 GYCSFRGKRSTMEDFY----DIKASTIEGQAVCMFGIFDGHGGSRAAEYLKEHLFNNLMKHPQFLT-DTKLALNETYKQTD-----------VAFLESEKDTYR-------------------DD----------------GSTASAAVLVGNHLYVANVGDSRTIVSKAGKAIALSDDHKPNRSDERKRIESAGGVIMWAGTWRVGGVLAMSRAFG------NRML---KQFVVAEPEIQDLEI 287          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: P2C54_ORYSJ (Probable protein phosphatase 2C 54 OS=Oryza sativa subsp. japonica GN=Os06g0179700 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.184e-17
Identity = 72/250 (28.80%), Postives = 110/250 (44.00%), Query Frame = 3
Query:   99 NVRYGLSSMQGWRATMEDAHAAYPDL----------DSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIEL 818
            N+R G  S  G R  MED H    DL          + + SF+GV+DGHGGK  A F    L + +++   +             L +++++R                        F+       A++ F   T            +SG+TA  A+I  + L++ANAGD R VLSR G A+ +S DH+P    EK R+   GG++  G +NG L + RA+GD   +  K        ++A P++  I L
Sbjct:   63 NIRSGDWSDIGGRQYMEDTHVCITDLAKNFGYQSVDNEAISFYGVFDGHGGKDAAHFVRDNLPRIIVEDADFP------------LELEKVVR----------------------RSFV------HADNQFAKTTL-----------SSGTTALTAMIFGRTLLIANAGDCRAVLSRCGTAIEMSVDHRPCSLSEKLRVESLGGYVDDGYLNGLLGVTRALGDWHLEGMKEAGNPGGPLSAEPELKMITL 261          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: P2C47_ORYSJ (Probable protein phosphatase 2C 47 OS=Oryza sativa subsp. japonica GN=Os05g0134200 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.184e-17
Identity = 64/237 (27.00%), Postives = 106/237 (44.73%), Query Frame = 3
Query:   99 NVRYGLSSMQGWRATMEDAHAAYPDLDSS----------TSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLV---------TSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKL 752
            ++R G  +  G R  MED H    DL +           ++F+GV+DGHGG   A +  ++  + + +   +     V          S ++AFL+ D              L D +D                                      +SG+TA  A++  +QL+VANAGD R VL R+G A+ +S+DH+ +   E +R+  +GG+I+ G +NG L++ RA+GD + K+
Sbjct:   74 SIRSGSFADIGPRRYMEDEHIRIDDLSAHLGSLLVCPLPSAFYGVFDGHGGLDAAAYMKRHAMRFLFEDSEFPQASQVDETYVQSVENSVRRAFLQAD------------LALADDLDI-----------------------------------SRSSGTTALTALVFGRQLLVANAGDCRAVLCRRGVAMEMSRDHRANYAEECERVAASGGYIEDGYLNGVLSVTRALGDWDMKM 263          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: P2C08_ORYSJ (Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.396e-16
Identity = 86/262 (32.82%), Postives = 117/262 (44.66%), Query Frame = 3
Query:  102 VRYGLSSMQGWRATMEDA-HAAYPDLDSSTS-------------------FFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRE-LAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIE 815
            V +G  S+ G R  MEDA   A P L +S                     FF VYDGHGG  VA+ C + +H  VL  E      L      A +  ++  R    W+E +A    ++D   G          G E  D     T E+         T GSTA VA++  +++VVAN GDSR VLSR G A+ LS DHKPD   E +R+  AGG +      R+ G L  +R+IGD            K  V A P+++ ++
Sbjct:   89 VSHGAVSVIGRRREMEDAIFVAAPFLAASKEAAVEGSGVAEEEGKEEDEGFFAVYDGHGGSRVAEACRERMHV-VLAEEVRVRRLLQGGGGGADVEDEDRAR----WKEAMAACFTRVDGEVG----------GAEEAD-----TGEQ---------TVGSTAVVAVVGPRRIVVANCGDSRAVLSRGGVAVPLSSDHKPDRPDEMERVEAAGGRVINWNGYRILGVLATSRSIGDYYL---------KPYVIAEPEVTVMD 312          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: PPM1E_RAT (Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm1e PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.381e-16
Identity = 69/223 (30.94%), Postives = 95/223 (42.60%), Query Frame = 3
Query:  114 LSSMQGWRATMEDAHAAYPDLD--------SSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG---FIQVGRVNGSLNLARAIGDVEFK 749
            + +++  R  MED H   PD +           ++F V+DGHGG   A + + +LH  +++ E +   D   +  +AF   DE    Q+  RE                                                 G+T  V  IR   L VA  GDS+ +L RKGQA+ L K HKPD E EK RI   GG   +    RVNGSL+++RAIGD E K
Sbjct:  231 IHAIKNMRRKMEDKHVCIPDFNMLFNLEDQEEQAYFAVFDGHGGVDAAIYASVHLHVNLVRQEMFPH-DPAEALCRAFRVTDERFV-QKAARESL---------------------------------------------RCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHK 406          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: PPM1E_MOUSE (Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.381e-16
Identity = 69/223 (30.94%), Postives = 95/223 (42.60%), Query Frame = 3
Query:  114 LSSMQGWRATMEDAHAAYPDLD--------SSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG---FIQVGRVNGSLNLARAIGDVEFK 749
            + +++  R  MED H   PD +           ++F V+DGHGG   A + + +LH  +++ E +   D   +  +AF   DE    Q+  RE                                                 G+T  V  IR   L VA  GDS+ +L RKGQA+ L K HKPD E EK RI   GG   +    RVNGSL+++RAIGD E K
Sbjct:  231 IHAIKNMRRKMEDKHVCIPDFNMLFNLEDQEEQAYFAVFDGHGGVDAAIYASVHLHVNLVRQEMFPH-DPAEALCRAFRVTDERFV-QKAARESL---------------------------------------------RCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHK 406          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: PPM1E_HUMAN (Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.381e-16
Identity = 70/223 (31.39%), Postives = 95/223 (42.60%), Query Frame = 3
Query:  114 LSSMQGWRATMEDAHAAYPDLD--------SSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI---QVGRVNGSLNLARAIGDVEFK 749
            + +++  R  MED H   PD +           ++F V+DGHGG   A + + +LH  +++ E +   D   +  +AF   DE    Q+  RE                                                 G+T  V  IR   L VA  GDS+ +L RKGQA+ L K HKPD E EK RI   GG I      RVNGSL+++RAIGD E K
Sbjct:  245 IHAIKNMRRKMEDKHVCIPDFNMLFNLEDQEEQAYFAVFDGHGGVDAAIYASIHLHVNLVRQEMFPH-DPAEALCRAFRVTDERFV-QKAARESL---------------------------------------------RCGTTGVVTFIRGNMLHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCIVWFGAWRVNGSLSVSRAIGDAEHK 420          
BLAST of CK937788 vs. ExPASy Swiss-Prot
Match: P2C13_ARATH (Probable protein phosphatase 2C 13 OS=Arabidopsis thaliana GN=At1g48040 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 9.049e-16
Identity = 73/237 (30.80%), Postives = 107/237 (45.15%), Query Frame = 3
Query:  135 RATMEDAHAAYPDLDSS---------TSFFGVYDGHGGKAVAKFCAKYLHQQVLKHEAYSAGDLVTSAQKAFLRMDEMMRGQRGWRELAILGDKMDKFSGMIEGFIWSPKGGEANDHFDDWTSEEGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGRVNGSLNLARAIGDVEFKLNKSLPAEKQIVTANPDISTIEL 818
            R TMED H    DL +          ++F+GV+DGHGG   A F  + L +   +   +     + S   AF  ++E+    R    LA L                            D T   G        + G+TA  A+I  + L+VANAGD R VL R+G A+++S DH+   E E+ RI   GG+ + G +NG L + RAIGD E K N    +   ++ ++P+I  I L
Sbjct:   88 RETMEDEHICIDDLSAHLGSYNFSVPSAFYGVFDGHGGPEAAIFMKENLTRLFFQDAVFPE---MPSIVDAFF-LEELENSHRKAFALADLA-------------------------MADETIVSG--------SCGTTALTALIIGRHLLVANAGDCRAVLCRRGVAVDMSFDHRSTYEPERRRIEDLGGYFEDGYLNGVLAVTRAIGDWELK-NPFTDSSSPLI-SDPEIGQIIL 285          
The following BLAST results are available for this feature:
BLAST of CK937788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
PPM1L_BOVIN2.154e-1729.41Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2... [more]
PP2C4_YEAST2.154e-1730.74Protein phosphatase 2C homolog 4 OS=Saccharomyces ... [more]
P2C76_ARATH2.813e-1730.20Probable protein phosphatase 2C 76 OS=Arabidopsis ... [more]
P2C54_ORYSJ8.184e-1728.80Probable protein phosphatase 2C 54 OS=Oryza sativa... [more]
P2C47_ORYSJ8.184e-1727.00Probable protein phosphatase 2C 47 OS=Oryza sativa... [more]
P2C08_ORYSJ1.396e-1632.82Probable protein phosphatase 2C 8 OS=Oryza sativa ... [more]
PPM1E_RAT2.381e-1630.94Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm... [more]
PPM1E_MOUSE2.381e-1630.94Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE... [more]
PPM1E_HUMAN2.381e-1631.39Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE... [more]
P2C13_ARATH9.049e-1630.80Probable protein phosphatase 2C 13 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004482_A08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937788 ID=CK937788; Name=CK937788; organism=Citrus sinensis; type=EST; length=839bp
GGGGAGATCTCATTATCTCTCTGCTCAAAGTAAAGAAAATGGGGGTATAT
CTGAGCACCCCCAAGACTGAGAAGTTCTCGGAGGATGGTCAAAATGAGAA
TGTTCGATATGGATTGTCGTCGATGCAGGGGTGGCGTGCGACCATGGAAG
ATGCTCATGCAGCTTATCCAGATTTGGACAGTTCTACATCTTTCTTTGGT
GTTTATGATGGCCACGGTGGTAAAGCAGTGGCCAAATTTTGTGCCAAGTA
TCTTCACCAGCAGGTGCTCAAACATGAAGCTTATTCAGCTGGAGATTTAG
TCACTTCAGCACAGAAAGCTTTTCTCAGAATGGATGAGATGATGCGTGGA
CAAAGGGGATGGAGAGAATTAGCTATACTGGGAGATAAAATGGACAAGTT
TTCTGGCATGATTGAGGGGTTCATATGGTCTCCTAAGGGTGGTGAAGCCA
ATGATCATTTTGACGATTGGACATCGGAGGAGGGTCCTCACTCAGATTTT
CATGGACCAACTTCTGGAAGTACAGCTTGCGTAGCAATCATTAGAGACAA
GCAACTCGTGGTTGCAAATGCTGGTGATTCTCGTTGTGTGTTATCGAGGA
AGGGCCAGGCACTTAATCTATCTAAAGACCATAAGCCTGATCTTGAGGTT
GAGAAAGATAGAATTCTCAAAGCTGGTGGTTTTATACAAGTTGGACGTGT
TAATGGAAGTTTAAATTTGGCGAGAGCTATTGGAGATGTGGAGTTCAAGC
TAAACAAAAGTTTGCCTGCTGAAAAACAGATTGTGACTGCCAATCCTGAT
ATAAGTACTATTGAACTTTTGTGATGACGATGAGTTTCT
back to top