CK937778

Overview
NameCK937778
Unique NameCK937778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NFU1_HUMAN (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Homo sapiens GN=NFU1 PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.373e-55
Identity = 118/221 (53.39%), Postives = 153/221 (69.23%), Query Frame = 1
Query:  151 LSNPITSQNSTLLKSIPLSSSVQSGKWNL---FRVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTK-SEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            L NP T      +K  PL   VQ   + L   F    R MFIQTQ TPNP+SL F PGKPV+E  + DFP   AA  SPLA+ L+ ++G+  VFFG  FITVTK +E+  W+LLKP+I+A IMDF++SG PL +  ET + +  A +E+D E VAMIKELL+TRIRP VQ+DGGD+ Y+GF  E G V+L++QG+C+ CPSS + LK+GI+NML  Y+PEV
Sbjct:   26 LKNPYT------IKKQPLHQFVQRPLFPLPAAFYHPVRYMFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDFITVTKENEELDWNLLKPDIYATIMDFFASGLPL-VTEETPSGE--AGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYKGF--EDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPEV 235          
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NFU1_DROVI (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila virilis GN=GJ19011 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.166e-55
Identity = 109/188 (57.98%), Postives = 137/188 (72.87%), Query Frame = 1
Query:  241 RVQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            ++ RR+MFIQTQ TPNP SL F PG  V+  G+  DFP+  AA  SPLAK L+ V+G+  VFFG  FIT++K E   W L+KPE+FA IMDF++SG P+  ++   A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS V LK+G++NML  Y+PEV
Sbjct:   69 QISRRSMFIQTQDTPNPESLKFLPGVDVLGKGNTYDFPSGSAAHCSPLAKLLFRVEGVRAVFFGGDFITISKEESGEWGLIKPEVFAVIMDFFASGLPVIHEARPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY--ENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEV 252          
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NFU1_DROAN (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila ananassae GN=GF20932 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.483e-54
Identity = 108/184 (58.70%), Postives = 133/184 (72.28%), Query Frame = 1
Query:  253 RTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            R MFIQTQ TPNP SL F PG  V+  G+  DFP+   A  SPLAK L+ V+G+  VFFG+ FIT++K E   W L+KPE+FA IMDF++SG P+  +S   A  DT I EDD ETV MIKELL+TRIRP VQ+DGGDI + G+  E G VKL+MQG+CS CPSS V LK+G++NML  Y+PEV
Sbjct:   65 RNMFIQTQDTPNPESLKFLPGVEVLGKGNTHDFPSGTTAHGSPLAKLLFRVEGVRAVFFGADFITISKEEGAEWSLIKPEVFAVIMDFFASGLPILHESTPNA--DTEILEDDDETVMMIKELLDTRIRPTVQEDGGDIVFMGY--ENGIVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEV 244          
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NFU1_DROPS (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=GA22888 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.759e-54
Identity = 107/187 (57.22%), Postives = 136/187 (72.73%), Query Frame = 1
Query:  244 VQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            + +R+MFIQTQ TPNP SL F PG  V+  G+  DFP+  AA  SPLAK L+ V+G+  VFFGS FIT++K E   W L+KPE+FA IMDF++SG P+  ++   A  DT I +DD ETV MIKELL+TRIRP VQ+DGGDI +  +  E G VKL+MQG+CS CPSS V LK+G++NML  Y+PEV
Sbjct:   62 IGKRSMFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSGTAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEESAEWSLIKPEVFAVIMDFFASGLPILHEARPNA--DTEILDDDDETVMMIKELLDTRIRPTVQEDGGDIVFISY--ENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEV 244          
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NFU1_DROPE (NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Drosophila persimilis GN=GL13432 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.759e-54
Identity = 107/187 (57.22%), Postives = 136/187 (72.73%), Query Frame = 1
Query:  244 VQRRTMFIQTQPTPNPSSLMFYPGKPVMEVGSA-DFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            + +R+MFIQTQ TPNP SL F PG  V+  G+  DFP+  AA  SPLAK L+ V+G+  VFFGS FIT++K E   W L+KPE+FA IMDF++SG P+  ++   A  DT I +DD ETV MIKELL+TRIRP VQ+DGGDI +  +  E G VKL+MQG+CS CPSS V LK+G++NML  Y+PEV
Sbjct:   58 IGKRSMFIQTQDTPNPDSLKFLPGVEVLGKGNTYDFPSGTAAHCSPLAKLLFRVEGVRAVFFGSDFITISKEESAEWSLIKPEVFAVIMDFFASGLPILHEARPNA--DTEILDDDDETVMMIKELLDTRIRPTVQEDGGDIVFISY--ENGVVKLKMQGSCSSCPSSIVTLKNGVQNMLQFYIPEV 240          
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: YH9J_SCHPO (NifU-like protein C1709.19c OS=Schizosaccharomyces pombe GN=SPBC1709.19c PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.370e-50
Identity = 101/228 (44.30%), Postives = 152/228 (66.67%), Query Frame = 1
Query:  130 YSRTLSYLSNPITSQNSTLLKSIPLSSS--VQSGKWNLFRVQRRTMFIQTQPTPNPSSLMFYPGKPVME--VGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSVFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            + R + + S     Q  T L   P+SS+  V + ++ L  +  R+++I+++ TPN ++L F PG  ++   +GS +F   +  +NSPLA+ L+ +DG+  +FFG  FITV+K   T W  +KPE+F+ IM+  S+G P+  +     A DT I E DS+ VAMIKEL+ET IRP++Q+DGGD+E+RGFD +TGTV L+++GAC  C SS+V LK+GI+ ML HY+PEV
Sbjct:    3 FPRVVPFQSLRTAFQKKTFL---PVSSAGNVFTPRFQLQAI--RSIWIRSEETPNENALKFLPGLDILPPTIGSCEFMRGQGTVNSPLAQKLFDIDGVDSIFFGKDFITVSKGAGTEWAQMKPEVFSVIMEHLSNGSPVLSEEPLKGASDTQILESDSQIVAMIKELIETSIRPSIQEDGGDVEFRGFDEKTGTVSLKLRGACRTCSSSAVTLKNGIQQMLKHYIPEV 225          
BLAST of CK937778 vs. ExPASy Swiss-Prot
Match: NFU1_YEAST (NifU-like protein, mitochondrial OS=Saccharomyces cerevisiae GN=NFU1 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 8.639e-29
Identity = 79/218 (36.24%), Postives = 118/218 (54.13%), Query Frame = 1
Query:  208 SSVQSGKWNLFRVQ-RRTMFIQTQPTPNPSSLMFYP--GKPVMEVGSADFPNARAAMN----SPLAKSLY-GVDGITRVFFGSVFITVTKSEDTSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTA------------INEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVXLKSGIENMLMHYVPEV 801
            S  + GK  +F +  +R + I+T  TPN ++L F    G+ +   GS          N    S LA+ ++    G+  +  G  F+T+ K     W+ +KPEI   +    + G+ +      A  ++              + E+D E   +I+EL++TRIRPA+ +DGGDI+YRG+DP+TGTV LR+QGAC+ C SS V LK GIE+ML HYV EV
Sbjct:    4 SVAKLGKSPIFYLNSQRLIHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINKDRMVHWNSIKPEIIDLLTKQLAYGEDVISKEFHAVQEEEGEGGYKINMPKFELTEEDEEVSELIEELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSSSEVTLKYGIESMLKHYVDEV 221          
The following BLAST results are available for this feature:
BLAST of CK937778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
NFU1_HUMAN5.373e-5553.39NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROVI9.166e-5557.98NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROAN3.483e-5458.70NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROPS7.759e-5457.22NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
NFU1_DROPE7.759e-5457.22NFU1 iron-sulfur cluster scaffold homolog, mitocho... [more]
YH9J_SCHPO1.370e-5044.30NifU-like protein C1709.19c OS=Schizosaccharomyces... [more]
NFU1_YEAST8.639e-2936.24NifU-like protein, mitochondrial OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004482_B07 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0001_IVF_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937778 ID=CK937778; Name=CK937778; organism=Citrus sinensis; type=EST; length=801bp
GGGGACAAGAGAAGAGAGCTTTCTTCAAGCTGAAGCATGAGGGGACTGGG
ACGGCTATTGCAGCGAGGTCTTTCTTCACACCGGCAGAGGCCGGGTTTCC
CCAAACAAAACGACGCCGTAGTTTATGCGTATTCCAGAACGCTGTCGTAT
TTGTCAAACCCGATCACTTCTCAAAATTCCACGTTACTAAAATCTATTCC
TCTCTCTTCTTCTGTACAATCCGGAAAATGGAATCTTTTTCGAGTGCAGA
GGAGGACAATGTTTATACAAACGCAGCCAACACCAAATCCTTCGTCTCTT
ATGTTTTATCCAGGGAAGCCTGTTATGGAAGTTGGGAGTGCAGATTTCCC
GAATGCTCGCGCAGCAATGAACTCTCCATTGGCAAAATCCCTTTACGGGG
TTGATGGTATTACTCGGGTTTTCTTTGGTTCAGTTTTCATCACTGTGACA
AAATCAGAGGATACTTCTTGGGATTTACTCAAACCTGAAATTTTTGCTGC
AATTATGGACTTTTATTCGTCAGGGCAACCACTTTTTCTAGACTCAGAAA
CTGCAGCAGCCAAAGACACAGCTATTAATGAGGATGACTCAGAAACTGTT
GCAATGATCAAAGAACTCCTCGAGACCCGTATTCGGCCAGCTGTGCAAGA
TGACGGTGGGGACATTGAGTACAGAGGATTTGATCCGGAAACAGGAACAG
TCAAATTAAGAATGCAAGGTGCATGTAGTGGCTGCCCGAGCTCGTCCGTC
ANATTAAAATCTGGCATTGAGAATATGCTTATGCACTATGTTCCTGAGGT
C
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