CX675370

Overview
NameCX675370
Unique NameCX675370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: POL_CAMVS (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) GN=ORF V PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14
Identity = 64/256 (25.00%), Postives = 120/256 (46.88%), Query Frame = 1
Query:   16 QFVIVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNWERPSSV---TEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFNWDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVL----MQHGK----VIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYGETCEIFTDHKSLKYLF-------TQKELNLRQRRWL 729
            +F  V++DDIL++S ++++H  H+ ++L+   +  +    KK + +  ++ FLG +   EG       +   +N + P ++    +++ FLG+  Y   ++   + I  PL    K+NV + W +      Q++K +L   P L  P      +I +DAS    G +L    +  G     +  YAS   K+ E+NY ++D E  A++  +K +  YL      I TD+   K          ++   N+R + WL
Sbjct:  396 KFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG-LEIDEGTHKPQGHILEHIN-KFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWL 649          
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: POL_CAMVE (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC) GN=ORF V PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14
Identity = 64/256 (25.00%), Postives = 120/256 (46.88%), Query Frame = 1
Query:   16 QFVIVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNWERPSSV---TEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFNWDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVL----MQHGK----VIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYGETCEIFTDHKSLKYLF-------TQKELNLRQRRWL 729
            +F  V++DDIL++S ++++H  H+ ++L+   +  +    KK + +  ++ FLG +   EG       +   +N + P ++    +++ FLG+  Y   ++   + I  PL    K+NV + W +      Q++K +L   P L  P      +I +DAS    G +L    +  G     +  YAS   K+ E+NY ++D E  A++  +K +  YL      I TD+   K          ++   N+R + WL
Sbjct:  396 KFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG-LEIDEGTHKPQGHILEHIN-KFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWL 649          
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: POL_CAMVD (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H) GN=ORF V PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14
Identity = 64/256 (25.00%), Postives = 120/256 (46.88%), Query Frame = 1
Query:   16 QFVIVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNWERPSSV---TEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFNWDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVL----MQHGK----VIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYGETCEIFTDHKSLKYLF-------TQKELNLRQRRWL 729
            +F  V++DDIL++S ++++H  H+ ++L+   +  +    KK + +  ++ FLG +   EG       +   +N + P ++    +++ FLG+  Y   ++   + I  PL    K+NV + W +      Q++K +L   P L  P      +I +DAS    G +L    +  G     +  YAS   K+ E+NY ++D E  A++  +K +  YL      I TD+   K          ++   N+R + WL
Sbjct:  391 KFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG-LEIDEGTHKPQGHILEHIN-KFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWL 644          
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: POL_CAMVC (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) GN=ORF V PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.017e-14
Identity = 64/256 (25.00%), Postives = 120/256 (46.88%), Query Frame = 1
Query:   16 QFVIVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNWERPSSV---TEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFNWDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVL----MQHGK----VIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYGETCEIFTDHKSLKYLF-------TQKELNLRQRRWL 729
            +F  V++DDIL++S ++++H  H+ ++L+   +  +    KK + +  ++ FLG +   EG       +   +N + P ++    +++ FLG+  Y   ++   + I  PL    K+NV + W +      Q++K +L   P L  P      +I +DAS    G +L    +  G     +  YAS   K+ E+NY ++D E  A++  +K +  YL      I TD+   K          ++   N+R + WL
Sbjct:  396 KFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG-LEIDEGTHKPQGHILEHIN-KFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWL 649          
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: POL_CAMVN (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153) GN=ORF V PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.441e-13
Identity = 61/256 (23.83%), Postives = 119/256 (46.48%), Query Frame = 1
Query:   16 QFVIVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNWERPSSVTE---VRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFNWDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVL----MQHGK----VIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYGETCEIFTDHKSLKYLF-------TQKELNLRQRRWL 729
            +F  V++DDI+++S ++++H  H+ ++L+   +  +    KK + +  ++ FLG +   EG       +   +N + P ++ +   ++ FLG+  Y   ++   + +  PL    K+NV + W +      Q++K +L   P L  P      +I +DAS    G +L    +  G     +  Y S   K+ E+NY ++D E  A++  +K +  YL      I TD+   K          ++   N+R + WL
Sbjct:  397 KFCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLG-LEIDEGTHKPQGHILEHIN-KFPDTLEDKKQLQRFLGILTYASDYIPNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAERNYHSNDKETLAVINTIKKFSIYLTPVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWL 650          
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: POL_COYMV (Putative polyprotein OS=Commelina yellow mottle virus PE=4 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.413e-12
Identity = 61/252 (24.21%), Postives = 113/252 (44.84%), Query Frame = 1
Query:   13 DQFVIVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGISADPAKVEVIVNW--ERPSSVTEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFNWDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCV----LMQHG-----KVIAYASRQLKSHEQNYPTHDLELAAIVFAL-KIWRHYLYGETCEIFTDHKSLKYLFTQKELNLRQR-RWL 729
            ++F+ V+IDDIL++S++ ++H  HL  +L+  +E  L     K +     + FLG  +    I   P  +  I ++  E+ ++   +RS+LG+  Y R +++    +  PL            +    K  +++K  +   P L LP +    +I +D    G G V    + +H      ++ AYAS      +    T D E+ A +  L K   +YL  +   I +D +++   + +   N   R RWL
Sbjct: 1558 EKFIAVYIDDILVFSETAEQHSQHLYTMLQLCKENGLILSPTKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDEKLATPEGMRSWLGILSYARNYIQDIGKLVQPLRQKMAPTGDKRMNPETWKMVRQIKEKVKNLPDLQLPPKDSFIIIETDGCMTGWGAVCKWKMSKHDPRSTERICAYASGSFNPIKS---TIDAEIQAAIHGLDKFKIYYLDKKELIIRSDCEAIIKFYNKTNENKPSRVRWL 1806          
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: POLG_PVCV2 (Genome polyprotein OS=Petunia vein clearing virus (isolate Hohn) PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.182e-11
Identity = 59/259 (22.78%), Postives = 119/259 (45.95%), Query Frame = 1
Query:   25 IVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGIS-ADPAKVEVIVNWERPSSVTEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFNWDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVLMQH----GKVIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYGETCEIFTDHKSLKYLFTQKEL---NLRQRRWLELVKDFDCSINYHPGK 777
            +V+IDDIL++S++ ++H   L   +  +++  +    KK     +++ FLG        S A    +E+    +   SV +++ FLG+  Y R F+   +   +PL+++ KK     W +  + + ++LK        L +PSEG   ++ +DAS +    VL++      K+  +AS + K  EQ+Y +   E+ A+   +K +  +L      +  D ++   +         N +  RW +    +   + +  GK
Sbjct: 1539 LVYIDDILLFSETLEDHIKLLNQFISLVKKFGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGIVNYIRDFIPEVTEHISPLSDMLKKKPP-AWGKCQDNAVKQLKQLAQQVKSLHIPSEGKK-ILQTDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQHYHSTFKEILAVKNGIKKFNFFLIHTNFLVEMDMRAFPKMIRLNPKIVPNSQLLRWAQWFSPYQFEVKHLKGK 1795          
BLAST of CX675370 vs. ExPASy Swiss-Prot
Match: POLG_PVCV1 (Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.182e-11
Identity = 59/259 (22.78%), Postives = 119/259 (45.95%), Query Frame = 1
Query:   25 IVFIDDILIYSKSKKEHETHLRIVLETLREKKLYGKFKKCEFWIDRVMFLGHIVTKEGIS-ADPAKVEVIVNWERPSSVTEVRSFLGLAGYYRRFVKGFSSIAAPLTNLTKKNVKFNWDEACEKSFQELKSHLVTAPVLTLPSEGGSFVIYSDASRKGLGCVLMQH----GKVIAYASRQLKSHEQNYPTHDLELAAIVFALKIWRHYLYGETCEIFTDHKSLKYLFTQKEL---NLRQRRWLELVKDFDCSINYHPGK 777
            +V+IDDIL++S++ ++H   L   +  +++  +    KK     +++ FLG        S A    +E+    +   SV +++ FLG+  Y R F+   +   +PL+++ KK     W +  + + ++LK        L +PSEG   ++ +DAS +    VL++      K+  +AS + K  EQ+Y +   E+ A+   +K +  +L      +  D ++   +         N +  RW +    +   + +  GK
Sbjct: 1538 LVYIDDILLFSETLEDHIKLLNQFISLVKKFGVMLSAKKMILAQNKIQFLGMDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGIVNYIRDFIPEVTEHISPLSDMLKKKPP-AWGKCQDNAVKQLKQLAQQVKSLHIPSEGKK-ILQTDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQHYHSTFKEILAVKNGIKKFNFFLIHTNFLVEMDMRAFPKMIRLNPKIVPNSQLLRWAQWFSPYQFEVKHLKGK 1794          
The following BLAST results are available for this feature:
BLAST of CX675370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
POL_CAMVS4.017e-1425.00Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVE4.017e-1425.00Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVD4.017e-1425.00Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVC4.017e-1425.00Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVN4.441e-1323.83Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_COYMV6.413e-1224.21Putative polyprotein OS=Commelina yellow mottle vi... [more]
POLG_PVCV23.182e-1122.78Genome polyprotein OS=Petunia vein clearing virus ... [more]
POLG_PVCV13.182e-1122.78Genome polyprotein OS=Petunia vein clearing virus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_61G09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61G09-N17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675370 ID=CX675370; Name=CX675370; organism=Citrus sinensis; type=EST; length=872bp
CAACCTTATCTTGACCAGTTTGTCATCGTCTTTATTGATGACATATTAAT
TTACTCTAAGAGTAAGAAGGAGCATGAGACGCACCTGAGGATTGTATTAG
AAACATTGCGGGAGAAGAAGTTGTATGGGAAATTTAAGAAATGTGAGTTT
TGGATTGATCGTGTGATGTTTTTGGGGCATATAGTGACGAAGGAAGGTAT
TTCAGCAGATCCAGCCAAAGTGGAGGTAATTGTGAATTGGGAAAGGCCTT
CTAGTGTGACTGAAGTAAGGAGTTTCTTAGGATTGGCAGGTTATTATAGG
CGCTTTGTCAAAGGATTTTCTAGCATAGCAGCACCATTGACTAATTTGAC
TAAGAAGAATGTGAAGTTCAATTGGGATGAGGCATGTGAAAAGAGCTTTC
AAGAGCTCAAGAGTCATTTGGTGACTGCCCCCGTTTTAACTCTCCCTTCT
GAAGGTGGAAGTTTTGTGATTTACAGTGATGCTTCCAGAAAAGGTTTGGG
TTGCGTTTTAATGCAACATGGTAAGGTTATAGCATATGCTTCTAGGCAGT
TAAAGAGTCATGAACAAAACTATCCAACTCATGATTTGGAATTGGCTGCT
ATAGTGTTTGCTTTAAAAATCTGGAGACACTATTTGTATGGGGAGACTTG
CGAGATCTTTACCGATCATAAGAGTTTGAAGTACTTGTTTACTCAGAAGG
AATTGAACTTGAGGCAGAGAAGATGGTTGGAGTTGGTGAAGGATTTTGAT
TGTTCTATTAATTACCATCCAGGTAAGGCAATTGTAACACCCCAAATCTA
ACACGTGTGGAGCACGTGAAGAAGGAGGTTACTCACAAATCAATGATCTA
TACTCATAGGTTTCAAACTGAA
back to top