CK937747
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_HALWD (30S ribosomal protein S19P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps19p PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 9.289e-23 Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 2 Query: 170 KFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKP-EPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 +F++RG LD L MS +++ L AR RR +RGL + +KLR+ R+A P + +P+RTHLR+M I+P + I VYNG++F +V I+PEMIGHYL EF ++ V+HG+ G Sbjct: 12 EFTYRGHTLDELQAMSLEDITALLPARQRRTIERGLTTEQ----QKLRETVRDADPQKTANDPIRTHLRDMPILPSFVEKTIAVYNGQSFERVRIEPEMIGHYLGEFQLTRTSVEHGQAG 127 HSP 2 Score: 25.0238 bits (53), Expect = 9.289e-23 Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3 Query: 525 VGATHSSRFIPLK 563 +GAT SS+F+PLK Sbjct: 128 IGATRSSKFVPLK 140
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_PICTO (30S ribosomal protein S19P OS=Picrophilus torridus GN=rps19p PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.203e-22 Identity = 52/120 (43.33%), Postives = 79/120 (65.83%), Query Frame = 2 Query: 167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 K+FS+RG L+ L +M +EL+ L ARARR + R + + L +KL G+K E ++TH+R++I++P+ +G I +YNG ++ + EIKPEMIGHYL EF+++ K VKH PG Sbjct: 28 KEFSYRGHSLEELQNMELNELLPLLPARARRSYSRQMNHEQEKLYEKLL--------GDK-ENIKTHVRDLIVLPQFVGKTIELYNGNSYIKFEIKPEMIGHYLGEFALTRKEVKHSGPG 138 HSP 2 Score: 25.0238 bits (53), Expect = 1.203e-22 Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3 Query: 525 VGATHSSRFIPLK 563 VGAT SS+F+PLK Sbjct: 139 VGATRSSKFLPLK 151
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_KORCO (30S ribosomal protein S19P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps19p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.213e-22 Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 2 Query: 167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 ++F +RG L+ L M+ DEL + +R RR +RGL + L+ K+RK K + +RTH R+M I+PEM+GS I V+NGK F ++ I PEMIGHYL EF+++ + V+HG+PG Sbjct: 4 REFRYRGYTLEQLQTMTLDELANVMPSRIRRTLKRGLSIENKKLLDKIRKYKAMGID----KVIRTHRRDMPILPEMVGSKIAVHNGKEFVEITIVPEMIGHYLGEFAMTNRIVRHGKPG 119 HSP 2 Score: 23.8682 bits (50), Expect = 1.213e-22 Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3 Query: 528 GATHSSRFIPLK 563 GAT SS+F+PLK Sbjct: 121 GATRSSKFVPLK 132
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_ARCFU (30S ribosomal protein S19P OS=Archaeoglobus fulgidus GN=rps19p PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.054e-22 Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 2 Query: 167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 + F +RG L+ L M +EL KL AR RR+ +RG + L++KLRK RTH R+M+++PEM+G ++ V+NGK F +VEIKPEMIGH L EF+++ + KH PG Sbjct: 11 RDFKYRGYTLEELQKMPLEELAKLLPARERRKIKRGFTEQEEKLLRKLRKKGT----------ARTHCRDMVVLPEMVGKVVFVHNGKEFVRVEIKPEMIGHRLGEFALTRRFEKHSGPG 120 HSP 2 Score: 24.2534 bits (51), Expect = 2.054e-22 Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3 Query: 525 VGATHSSRFIPLK 563 VGAT SS+++PLK Sbjct: 121 VGATRSSKYVPLK 133
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_THEAC (30S ribosomal protein S19P OS=Thermoplasma acidophilum GN=rps19p PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 3.448e-22 Identity = 52/120 (43.33%), Postives = 76/120 (63.33%), Query Frame = 2 Query: 167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 K+F+++G L+ L MS +EL+K+ ARARR R + L++KL + E V+TH+R++II+P +G I+ VYNG ++ + EIKPEMIGHYL EF ++ K VKH PG Sbjct: 28 KEFTYKGYSLEDLQKMSMEELIKILPARARRTLLREPNYEQKKLMEKLESDE---------EDVKTHVRDVIILPNYVGKIVEVYNGNSYFKFEIKPEMIGHYLGEFVMTRKEVKHSGPG 138 HSP 2 Score: 24.6386 bits (52), Expect = 3.448e-22 Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3 Query: 525 VGATHSSRFIPLK 563 VGAT SS+F+PLK Sbjct: 139 VGATRSSKFMPLK 151
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_META3 (30S ribosomal protein S19P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps19p PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 7.566e-22 Identity = 51/126 (40.48%), Postives = 79/126 (62.70%), Query Frame = 2 Query: 149 PKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 P++R +F ++G L L +M + +++ AR RR ++G+ K L+ K++KA+R A G+ P +RTH R+ +I PEMIG G+YNGK F +V++ E IG +L EF+ S K V+HG PG Sbjct: 26 PRRRV--EFKYKGFTLGELQEMPIKKFMEIVPARQRRSMKKGITPKQRKLVMKIKKARRLANRGKDPRTIRTHCRDFVITPEMIGLPFGIYNGKEFIEVKLVEEAIGRFLGEFAPSRKVVQHGSPG 149 HSP 2 Score: 20.7866 bits (42), Expect = 7.566e-22 Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 3 Query: 525 VGATHSSRFIPLK 563 +GAT S F+P+K Sbjct: 150 MGATRGSMFVPIK 162
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_CENSY (30S ribosomal protein S19P OS=Cenarchaeum symbiosum GN=rps19p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 7.678e-22 Identity = 51/120 (42.50%), Postives = 75/120 (62.50%), Query Frame = 2 Query: 167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 KKF +RG + L M D L +LF++R RR RG+ LI++++ A+ G++ P++THLR++I++P M G + V++GK F VEI EMIGHYL E+ I+ K V HG PG Sbjct: 3 KKFEYRGKPAEELESMPLDSLFRLFNSRQRRSLTRGITDGKRKLIREIKDARA----GKEGNPIKTHLRDLIVLPSMTGVTVNVFSGKEFRPVEITTEMIGHYLGEYVITNKRVSHGAPG 118 HSP 2 Score: 21.1718 bits (43), Expect = 7.678e-22 Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 3 Query: 525 VGATHSSRFIPLK 563 VGA+ SS ++PLK Sbjct: 119 VGASRSSLYVPLK 131
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METST (30S ribosomal protein S19P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps19p PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 9.950e-22 Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 2 Query: 167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 K F FRG L+ L +MS DE+++L +R RR +RG + ++ K+ K K +P ++TH R+MI++P M+G G+YNG+ F +V I+PEMIG Y EF+ + V+HG PG Sbjct: 4 KIFKFRGYTLEELQEMSLDEVIELLPSRQRRSLKRGFLPRQEKVLDKMEKVKDMKNDSGRPIVIKTHCRDMIVLPNMVGYTFGIYNGQEFVEVTIQPEMIGCYFGEFAQTRGRVQHGDPG 123 HSP 2 Score: 23.0978 bits (48), Expect = 9.950e-22 Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3 Query: 525 VGATHSSRFIPLK 563 +GAT SS F+PLK Sbjct: 124 MGATRSSMFVPLK 136
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_NANEQ (30S ribosomal protein S19P OS=Nanoarchaeum equitans GN=rps19p PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 1.183e-21 Identity = 57/120 (47.50%), Postives = 72/120 (60.00%), Query Frame = 2 Query: 167 KKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 K+F ++G L L MS +EL K+ AR RR R LK KKL K A G+ +P++TH RN II+P M+G + VYNGK + V+IKPEMIGHYL EFS + K KH PG Sbjct: 8 KEFRYKGYTLQELEQMSLEELAKIMPARQRRTLLRRLKFGWSDQQKKLFKKILLAKEGKYKKPIKTHARNTIILPFMVGVTVHVYNGKEYVPVQIKPEMIGHYLGEFSFTTKRPKHSAPG 127
BLAST of CK937747 vs. ExPASy Swiss-Prot
Match: RS19_METTP (30S ribosomal protein S19P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps19p PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 3.710e-21 Identity = 51/127 (40.16%), Postives = 81/127 (63.78%), Query Frame = 2 Query: 146 LPKKRTFKKFSFRGVDLDALLDMSNDELVKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 526 LPK++ ++F++RG + L M +E+ +L +R RR +RGL ++ + KLR A+ A +THLR+ I++PEM+G ++ ++NGKTF +VEI PEMIGHYL E++++ V HG G Sbjct: 9 LPKRK--EEFTYRGYRVSELAKMRLEEIAELLPSRQRRTLRRGLSKEHRKFMAKLR-ARGTA---------KTHLRDAIVLPEMVGKVVEIHNGKTFQRVEIIPEMIGHYLGEYALTRARVIHGAAG 123 HSP 2 Score: 25.409 bits (54), Expect = 3.710e-21 Identity = 10/13 (76.92%), Postives = 12/13 (92.31%), Query Frame = 3 Query: 525 VGATHSSRFIPLK 563 VGAT SS+F+PLK Sbjct: 124 VGATRSSKFVPLK 136 The following BLAST results are available for this feature:
BLAST of CK937747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937747 ID=CK937747; Name=CK937747; organism=Citrus sinensis; type=EST; length=745bpback to top |