FC921780

Overview
NameFC921780
Unique NameFC921780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length283
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 8.011e-31
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187
            M GACGYGNL+ +GYG  TAALSTALFN+G  CGACFE+QC +DP WC PGSI V+ATNFCP
Sbjct:   49 MGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGSIIVSATNFCP 110          

HSP 2 Score: 43.5134 bits (101), Expect = 8.011e-31
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP +HFDL++P F QIA
Sbjct:  120 GGWCNPPLKHFDLAEPAFLQIA 141          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.609e-30
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC---VNDPRWCPPGSIFVTATNFCP 187
            M GACGYGNLY +GYGTNTAALSTALFNNG+SCGACFE++C         C PGS+ VTATNFCP
Sbjct:   81 MGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGSVVVTATNFCP 145          

HSP 2 Score: 47.3654 bits (111), Expect = 6.609e-30
Identity = 17/22 (77.27%), Postives = 21/22 (95.45%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP+ HFD+SQPVF++IA
Sbjct:  155 GGWCNPPRAHFDMSQPVFQRIA 176          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.122e-29
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = 2
Query:    8 GACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187
            GACGYG+L+++GYG  TAALSTALFN G +CGAC++I CVNDP+WC PGS+ +TATNFCP
Sbjct:   67 GACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVNDPQWCLPGSVKITATNFCP 126          

HSP 2 Score: 41.2022 bits (95), Expect = 1.122e-29
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            G WCNPPQ+HFDLS P+F +IA
Sbjct:  134 GVWCNPPQKHFDLSLPMFLKIA 155          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.477e-29
Identity = 49/66 (74.24%), Postives = 53/66 (80.30%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDP--RWCPPG--SIFVTATNFCP 187
            M GACGYGNLY +GYG N AALSTALFN+G SCGACFEI+CVN P   WC PG  SI +TATNFCP
Sbjct:   53 MGGACGYGNLYSQGYGVNNAALSTALFNSGQSCGACFEIKCVNQPGWEWCHPGSPSILITATNFCP 118          

HSP 2 Score: 41.5874 bits (96), Expect = 2.477e-29
Identity = 15/22 (68.18%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP+ HFDL+ P+F  IA
Sbjct:  128 GGWCNPPRPHFDLAMPMFLHIA 149          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.478e-29
Identity = 48/63 (76.19%), Postives = 53/63 (84.13%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPG-SIFVTATNFCP 187
            M GACGYGNLY +GYG  TAALSTALF+ G+SCGACFE+ CVNDP+WC  G SI VTATNFCP
Sbjct:   55 MGGACGYGNLYSQGYGLETAALSTALFDQGLSCGACFELMCVNDPQWCIKGRSIVVTATNFCP 117          

HSP 2 Score: 40.4318 bits (93), Expect = 2.478e-29
Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GG C+PP  HFDLSQP++E+IA
Sbjct:  119 GGACDPPNHHFDLSQPIYEKIA 140          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 3.227e-29
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187
            M GACGYGNLY  GYGTNTAALST LFN+G +CG+C+E++C ND +WC PGS+ VTATN CP
Sbjct:   46 MGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCP 107          

HSP 2 Score: 41.5874 bits (96), Expect = 3.227e-29
Identity = 14/21 (66.67%), Postives = 18/21 (85.71%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP+ HFD+++P F QI
Sbjct:  117 GGWCNPPRPHFDMAEPAFLQI 137          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 7.112e-29
Identity = 42/60 (70.00%), Postives = 53/60 (88.33%), Query Frame = 2
Query:    8 GACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187
            GACGYG+L+++GYG  TAALSTALFN G +CGAC++I CV+DP+WC PG+I +TATNFCP
Sbjct:   74 GACGYGDLFKQGYGLETAALSTALFNEGYTCGACYQIMCVHDPQWCLPGTIKITATNFCP 133          

HSP 2 Score: 41.2022 bits (95), Expect = 7.112e-29
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            G WCNPPQ+HFDLS P+F +IA
Sbjct:  141 GVWCNPPQKHFDLSLPMFLKIA 162          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.244e-29
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 2
Query:    8 GACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187
            GACGYG+L+++GYG  TAALSTALFNNG  CGAC+EI C + P+WC PGSI +TATNFCP
Sbjct:  109 GACGYGDLHKQGYGLETAALSTALFNNGSRCGACYEIMCEHAPQWCLPGSIKITATNFCP 168          

HSP 2 Score: 42.743 bits (99), Expect = 9.244e-29
Identity = 16/20 (80.00%), Postives = 19/20 (95.00%), Query Frame = 3
Query:  222 WCNPPQQHFDLSQPVFEQIA 281
            WCNPPQ+HFDLSQP+F +IA
Sbjct:  178 WCNPPQKHFDLSQPMFLKIA 197          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.569e-28
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 2
Query:    8 GACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCPS 190
            GACGYGNL+R+GYG  TAALSTALFN+G +CGAC+EI C  DP+WC PGS+ +TATNFCP+
Sbjct:   77 GACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPA 137          

HSP 2 Score: 36.965 bits (84), Expect = 1.569e-28
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:  222 WCNPPQQHFDLSQPVFEQIA 281
            WCNPPQ+HFDLS  +F +IA
Sbjct:  146 WCNPPQKHFDLSLAMFLKIA 165          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.570e-28
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 2
Query:    8 GACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCPS 190
            GACGYGNL+R+GYG  TAALSTALFN+G +CGAC+EI C  DP+WC PGS+ +TATNFCP+
Sbjct:   71 GACGYGNLFRQGYGLATAALSTALFNDGYTCGACYEIMCTRDPQWCLPGSVKITATNFCPA 131          

HSP 2 Score: 36.965 bits (84), Expect = 1.570e-28
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = 3
Query:  222 WCNPPQQHFDLSQPVFEQIA 281
            WCNPPQ+HFDLS  +F +IA
Sbjct:  140 WCNPPQKHFDLSLAMFLKIA 159          
The following BLAST results are available for this feature:
BLAST of FC921780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA2_ARATH8.011e-3174.19Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA5_ORYSJ6.609e-3072.31Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP23_ARATH1.122e-2971.67Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXPA7_ORYSJ2.477e-2974.24Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ARATH2.478e-2976.19Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA2_ORYSJ3.227e-2970.97Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP25_ARATH7.112e-2970.00Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP24_ARATH9.244e-2971.67Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP26_ARATH1.569e-2872.13Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH1.570e-2872.13Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC06052C04T7 RindPdigS Citrus sinensis cDNA clone C06052C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921780 ID=FC921780; Name=FC921780; organism=Citrus sinensis; type=EST; length=283bp
CATGGATGGCGCTTGTGGGTATGGAAACTTATACCGCGAGGGATATGGGA
CAAACACCGCAGCTCTGAGCACTGCGCTTTTCAACAATGGCATGAGCTGT
GGGGCTTGTTTTGAGATCCAGTGTGTTAATGACCCAAGATGGTGCCCTCC
GGGCTCCATTTTTGTTACTGCCACAAATTTTTGCCCCTCCAAATAATGCT
CCCCCAAACAATGCCGGTGGCTGGTGCAATCCTCCCCAGCAACATTTTGA
CCTCTCTCAGCCTGTGTTTGAACAAATTGCTCA
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