FC921780

Overview
NameFC921780
Unique NameFC921780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length283
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.880e-28
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187
            M GACGYGNLY +GYGTNTAALSTALFN+G +CG+C+E++C N    C PGSI VTATNFCP
Sbjct:   41 MGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCP 102          

HSP 2 Score: 41.2022 bits (95), Expect = 5.880e-28
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP+ HFD+++P F  IA
Sbjct:  112 GGWCNPPRPHFDMAEPAFLHIA 133          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.880e-28
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187
            M GACGYGNLY +GYGTNTAALSTALFN+G +CG+C+E++C N    C PGSI VTATNFCP
Sbjct:   41 MGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCP 102          

HSP 2 Score: 41.2022 bits (95), Expect = 5.880e-28
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP+ HFD+++P F  IA
Sbjct:  112 GGWCNPPRPHFDMAEPAFLHIA 133          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.217e-27
Identity = 46/64 (71.88%), Postives = 48/64 (75.00%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC-VNDPRWCPPG-SIFVTATNFCP 187
            M GACGYG+LY  GYGT TAALSTALFN G SCGACF I C     +WC PG SI VTATNFCP
Sbjct:   42 MGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCP 105          

HSP 2 Score: 45.0542 bits (105), Expect = 8.217e-27
Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP++HFD+SQP +E IA
Sbjct:  115 GGWCNPPRRHFDMSQPAWETIA 136          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.812e-26
Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVND-PRWCPPG--SIFVTATNFCP 187
            M GACGYGNLY +GYGT+TAALSTALFN G+SCG+C+E++C  D  R C PG  ++ VTATNFCP
Sbjct:   45 MGGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCP 109          

HSP 2 Score: 43.1282 bits (100), Expect = 1.812e-26
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP++HFDL++P F +IA
Sbjct:  119 GGWCNPPRRHFDLAEPAFLRIA 140          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.200e-26
Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187
            M GACGYGNLY +GYGT TAALSTALFN+G++CG C+++ C    D  WC PG S+ +TATNFCP
Sbjct:   51 MGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCP 115          

HSP 2 Score: 42.3578 bits (98), Expect = 5.200e-26
Identity = 14/21 (66.67%), Postives = 19/21 (90.48%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP+ HFD++QP +E+I
Sbjct:  125 GGWCNPPRPHFDMAQPAWEKI 145          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.807e-26
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187
            M GACGYGNLY +GYGT  AALSTALFN+G SCG C++I C     P+WC PG ++ +TATNFCP
Sbjct:   56 MGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCP 120          

HSP 2 Score: 42.3578 bits (98), Expect = 8.807e-26
Identity = 14/21 (66.67%), Postives = 19/21 (90.48%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP+ HFD++QP +E+I
Sbjct:  130 GGWCNPPRPHFDMAQPAWEKI 150          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.808e-26
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187
            M GACGYGNLY +GYGT TAALSTALF++G SCG C+ + C    DPRWC  G S+ VTATNFCP
Sbjct:   51 MGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCP 115          

HSP 2 Score: 42.3578 bits (98), Expect = 8.808e-26
Identity = 14/21 (66.67%), Postives = 19/21 (90.48%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP+ HFD++QP +E+I
Sbjct:  125 GGWCNPPRPHFDMAQPAWERI 145          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.148e-25
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC-VNDPRWCPPG-SIFVTATNFCP 187
            M GACGYGNLY  GYGTNTAALS+ALFN+G +CG C++I C  ++ +WC  G S+ +TATN CP
Sbjct:   41 MGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCP 104          

HSP 2 Score: 46.2098 bits (108), Expect = 1.148e-25
Identity = 16/21 (76.19%), Postives = 20/21 (95.24%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP+QHFD++QP +EQI
Sbjct:  114 GGWCNPPRQHFDMAQPAWEQI 134          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.493e-25
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187
            M GACGYGNLY +GY TNTAALSTALFN+G SCG C++I C     P+WC  G SI +TATNFCP
Sbjct:   45 MGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCP 109          

HSP 2 Score: 41.9726 bits (97), Expect = 1.493e-25
Identity = 15/22 (68.18%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP+ HFD++QP F  IA
Sbjct:  119 GGWCNPPRPHFDMAQPAFLTIA 140          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.494e-25
Identity = 43/62 (69.35%), Postives = 48/62 (77.42%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187
            M GACGYGNLY  GYGT+TAALSTALFNNG SCGACFE++C      C  G++ VTATN CP
Sbjct:   44 MGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGS-CLAGTVAVTATNLCP 104          

HSP 2 Score: 42.3578 bits (98), Expect = 1.494e-25
Identity = 14/22 (63.64%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP+ HFD+++P F +IA
Sbjct:  114 GGWCNPPRPHFDMAEPAFTRIA 135          
The following BLAST results are available for this feature:
BLAST of FC921780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXPA4_ORYSJ5.880e-2872.58Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI5.880e-2872.58Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA8_ORYSJ8.217e-2771.88Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ORYSJ1.812e-2667.69Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP13_ORYSJ5.200e-2664.62Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ8.807e-2664.62Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ8.808e-2667.69Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ1.148e-2562.50Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ARATH1.493e-2567.69Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXP11_ORYSJ1.494e-2569.35Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC06052C04T7 RindPdigS Citrus sinensis cDNA clone C06052C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921780 ID=FC921780; Name=FC921780; organism=Citrus sinensis; type=EST; length=283bp
CATGGATGGCGCTTGTGGGTATGGAAACTTATACCGCGAGGGATATGGGA
CAAACACCGCAGCTCTGAGCACTGCGCTTTTCAACAATGGCATGAGCTGT
GGGGCTTGTTTTGAGATCCAGTGTGTTAATGACCCAAGATGGTGCCCTCC
GGGCTCCATTTTTGTTACTGCCACAAATTTTTGCCCCTCCAAATAATGCT
CCCCCAAACAATGCCGGTGGCTGGTGCAATCCTCCCCAGCAACATTTTGA
CCTCTCTCAGCCTGTGTTTGAACAAATTGCTCA
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