FC921780
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 5.880e-28 Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187 M GACGYGNLY +GYGTNTAALSTALFN+G +CG+C+E++C N C PGSI VTATNFCP Sbjct: 41 MGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCP 102 HSP 2 Score: 41.2022 bits (95), Expect = 5.880e-28 Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQIA 281 GGWCNPP+ HFD+++P F IA Sbjct: 112 GGWCNPPRPHFDMAEPAFLHIA 133
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 5.880e-28 Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187 M GACGYGNLY +GYGTNTAALSTALFN+G +CG+C+E++C N C PGSI VTATNFCP Sbjct: 41 MGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCP 102 HSP 2 Score: 41.2022 bits (95), Expect = 5.880e-28 Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQIA 281 GGWCNPP+ HFD+++P F IA Sbjct: 112 GGWCNPPRPHFDMAEPAFLHIA 133
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 8.217e-27 Identity = 46/64 (71.88%), Postives = 48/64 (75.00%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC-VNDPRWCPPG-SIFVTATNFCP 187 M GACGYG+LY GYGT TAALSTALFN G SCGACF I C +WC PG SI VTATNFCP Sbjct: 42 MGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNFCP 105 HSP 2 Score: 45.0542 bits (105), Expect = 8.217e-27 Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQIA 281 GGWCNPP++HFD+SQP +E IA Sbjct: 115 GGWCNPPRRHFDMSQPAWETIA 136
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.812e-26 Identity = 44/65 (67.69%), Postives = 53/65 (81.54%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVND-PRWCPPG--SIFVTATNFCP 187 M GACGYGNLY +GYGT+TAALSTALFN G+SCG+C+E++C D R C PG ++ VTATNFCP Sbjct: 45 MGGACGYGNLYSQGYGTSTAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCP 109 HSP 2 Score: 43.1282 bits (100), Expect = 1.812e-26 Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQIA 281 GGWCNPP++HFDL++P F +IA Sbjct: 119 GGWCNPPRRHFDLAEPAFLRIA 140
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 5.200e-26 Identity = 42/65 (64.62%), Postives = 51/65 (78.46%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187 M GACGYGNLY +GYGT TAALSTALFN+G++CG C+++ C D WC PG S+ +TATNFCP Sbjct: 51 MGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNFCP 115 HSP 2 Score: 42.3578 bits (98), Expect = 5.200e-26 Identity = 14/21 (66.67%), Postives = 19/21 (90.48%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQI 278 GGWCNPP+ HFD++QP +E+I Sbjct: 125 GGWCNPPRPHFDMAQPAWEKI 145
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 8.807e-26 Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187 M GACGYGNLY +GYGT AALSTALFN+G SCG C++I C P+WC PG ++ +TATNFCP Sbjct: 56 MGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCP 120 HSP 2 Score: 42.3578 bits (98), Expect = 8.807e-26 Identity = 14/21 (66.67%), Postives = 19/21 (90.48%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQI 278 GGWCNPP+ HFD++QP +E+I Sbjct: 130 GGWCNPPRPHFDMAQPAWEKI 150
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 8.808e-26 Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187 M GACGYGNLY +GYGT TAALSTALF++G SCG C+ + C DPRWC G S+ VTATNFCP Sbjct: 51 MGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNFCP 115 HSP 2 Score: 42.3578 bits (98), Expect = 8.808e-26 Identity = 14/21 (66.67%), Postives = 19/21 (90.48%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQI 278 GGWCNPP+ HFD++QP +E+I Sbjct: 125 GGWCNPPRPHFDMAQPAWERI 145
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.148e-25 Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC-VNDPRWCPPG-SIFVTATNFCP 187 M GACGYGNLY GYGTNTAALS+ALFN+G +CG C++I C ++ +WC G S+ +TATN CP Sbjct: 41 MGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCDQSNSKWCKAGTSVTITATNLCP 104 HSP 2 Score: 46.2098 bits (108), Expect = 1.148e-25 Identity = 16/21 (76.19%), Postives = 20/21 (95.24%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQI 278 GGWCNPP+QHFD++QP +EQI Sbjct: 114 GGWCNPPRQHFDMAQPAWEQI 134
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.493e-25 Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187 M GACGYGNLY +GY TNTAALSTALFN+G SCG C++I C P+WC G SI +TATNFCP Sbjct: 45 MGGACGYGNLYTDGYKTNTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCP 109 HSP 2 Score: 41.9726 bits (97), Expect = 1.493e-25 Identity = 15/22 (68.18%), Postives = 18/22 (81.82%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQIA 281 GGWCNPP+ HFD++QP F IA Sbjct: 119 GGWCNPPRPHFDMAQPAFLTIA 140
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.494e-25 Identity = 43/62 (69.35%), Postives = 48/62 (77.42%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187 M GACGYGNLY GYGT+TAALSTALFNNG SCGACFE++C C G++ VTATN CP Sbjct: 44 MGGACGYGNLYSAGYGTSTAALSTALFNNGQSCGACFEVRCGGGGS-CLAGTVAVTATNLCP 104 HSP 2 Score: 42.3578 bits (98), Expect = 1.494e-25 Identity = 14/22 (63.64%), Postives = 19/22 (86.36%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQIA 281 GGWCNPP+ HFD+++P F +IA Sbjct: 114 GGWCNPPRPHFDMAEPAFTRIA 135 The following BLAST results are available for this feature:
BLAST of FC921780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921780 ID=FC921780; Name=FC921780; organism=Citrus sinensis; type=EST; length=283bpback to top |