FC921780

Overview
NameFC921780
Unique NameFC921780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length283
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.278e-25
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 2 
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187
            M GACGYG+LY +GYGT  AALSTALFN+G SCG C++I C     P+WC PG ++ +TATNFCP
Sbjct:   69 MGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNFCP 133

HSP 2 Score: 42.3578 bits (98), Expect = 4.278e-25
Identity = 14/21 (66.67%), Postives = 19/21 (90.48%), Query Frame = 3 
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP+ HFD++QP +E+I
Sbjct:  143 GGWCNPPRPHFDMAQPAWEKI 163
[Close]
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 7.257e-25
Identity = 40/65 (61.54%), Postives = 46/65 (70.77%), Query Frame = 2 
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC-VNDPRWCPPG--SIFVTATNFCP 187
            M GACGYGNLY  GYG   AALS+ALFN+G  CGAC+ I C  +  +WC PG  SI +TATN CP
Sbjct:   45 MGGACGYGNLYNAGYGLYNAALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCP 109

HSP 2 Score: 46.9802 bits (110), Expect = 7.257e-25
Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 3 
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP+QHFD+SQP +E IA
Sbjct:  119 GGWCNPPRQHFDMSQPAWENIA 140
[Close]
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.442e-25
Identity = 40/65 (61.54%), Postives = 49/65 (75.38%), Query Frame = 2 
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187
            M G CGYG+LY +GYGT  AALSTALFN+G SCG C++I C     P+WC PG ++ +TATNFCP
Sbjct:   51 MGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNFCP 115

HSP 2 Score: 42.3578 bits (98), Expect = 9.442e-25
Identity = 14/21 (66.67%), Postives = 19/21 (90.48%), Query Frame = 3 
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP+ HFD++QP +E+I
Sbjct:  125 GGWCNPPRPHFDMAQPAWEKI 145
[Close]
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.447e-25
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 2 
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187
            M GACGYG+LY  GYGT TAALSTALFN+G SCG C+ I C    D RWC  G S+ +TATNFCP
Sbjct:   43 MGGACGYGDLYSAGYGTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCP 107

HSP 2 Score: 41.9726 bits (97), Expect = 9.447e-25
Identity = 14/21 (66.67%), Postives = 19/21 (90.48%), Query Frame = 3 
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP +HFD++QP +E+I
Sbjct:  117 GGWCNPPLKHFDMAQPAWEKI 137
[Close]
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.082e-24
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 2 
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDP--RWCPP-GSIFVTATNFCP 187
            M GACGYGNLY +GYG   AALSTALFN+G +CG C+ I C  D   RWC P G++ VTATN CP
Sbjct:   44 MGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATNLCP 108

HSP 2 Score: 44.2838 bits (103), Expect = 2.082e-24
Identity = 15/21 (71.43%), Postives = 20/21 (95.24%), Query Frame = 3 
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP++HFD+SQP +E+I
Sbjct:  118 GGWCNPPRRHFDMSQPAWERI 138
[Close]
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.083e-24
Identity = 41/64 (64.06%), Postives = 46/64 (71.88%), Query Frame = 2 
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC-VNDPRWCPPG-SIFVTATNFCP 187
            M GACGYGNLY  GYG N AALS+ALFN+G  CGAC+ I C  +   WC PG SI +TATN CP
Sbjct:   40 MGGACGYGNLYNAGYGLNNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGTSITITATNLCP 103

HSP 2 Score: 43.1282 bits (100), Expect = 2.083e-24
Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 3 
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP++HFD+SQP +  IA
Sbjct:  113 GGWCNPPRKHFDMSQPAWTSIA 134
[Close]
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.706e-24
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 2 
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187
            M GACGY +LY +GYGT  AALSTALFN+G SCG C++I C     P+WC PG ++ VTATNFCP
Sbjct:   67 MGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTVTATNFCP 131

HSP 2 Score: 42.3578 bits (98), Expect = 2.706e-24
Identity = 14/21 (66.67%), Postives = 19/21 (90.48%), Query Frame = 3 
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP+ HFD++QP +E+I
Sbjct:  141 GGWCNPPRPHFDMAQPAWEKI 161
[Close]
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.587e-24
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 2 
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVN--DPRWCPPG-SIFVTATNFCP 187
            M GACGYGNLY  GYGTNTAALS+ALFN+G SCG C++I C +  +PRWC  G ++ +T TN CP
Sbjct:   49 MGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGRTVTITGTNLCP 113

HSP 2 Score: 39.6614 bits (91), Expect = 4.587e-24
Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 3 
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP+ HFD+++P + QI
Sbjct:  123 GGWCNPPRTHFDMAEPAWLQI 143
[Close]
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.589e-24
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 2 
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC-VNDPRWCPPG-SIFVTATNFCP 187
            M G+CGYGN+Y  GYGTNT ALS+AL+ +G SCGAC+ + C  +  RWC  G S+ VTATN+CP
Sbjct:   44 MGGSCGYGNMYSAGYGTNTTALSSALYGDGASCGACYLVTCDASATRWCKNGTSVTVTATNYCP 107

HSP 2 Score: 45.0542 bits (105), Expect = 4.589e-24
Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 3 
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP++HFD+SQP +E IA
Sbjct:  117 GGWCNPPRRHFDMSQPAWEAIA 138
[Close]
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.228e-23
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 2 
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVND--PRWCPPG-SIFVTATNFCP 187
            M GACGYGNLY +GYG + AALS ALFN+G SCG C+ I C     P+WC  G ++ VTATN CP
Sbjct:   45 MGGACGYGNLYDQGYGVDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCP 109

HSP 2 Score: 45.0542 bits (105), Expect = 2.228e-23
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 3 
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP+ HFD+SQP +EQI
Sbjct:  119 GGWCNPPRPHFDMSQPAWEQI 139
The following BLAST results are available for this feature:
BLAST of FC921780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP22_ORYSJ4.278e-2563.08Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA3_ORYSJ7.257e-2561.54Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP14_ORYSJ9.442e-2561.54Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH9.447e-2566.15Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP27_ORYSJ2.082e-2463.08Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP33_ORYSJ2.083e-2464.06Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ2.706e-2463.08Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP15_ORYSJ4.587e-2463.08Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ4.589e-2459.38Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP31_ORYSJ2.228e-2360.00Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06052C04T7 RindPdigS Citrus sinensis cDNA clone C06052C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921780 ID=FC921780; Name=FC921780; organism=Citrus sinensis; type=EST; length=283bp
CATGGATGGCGCTTGTGGGTATGGAAACTTATACCGCGAGGGATATGGGA
CAAACACCGCAGCTCTGAGCACTGCGCTTTTCAACAATGGCATGAGCTGT
GGGGCTTGTTTTGAGATCCAGTGTGTTAATGACCCAAGATGGTGCCCTCC
GGGCTCCATTTTTGTTACTGCCACAAATTTTTGCCCCTCCAAATAATGCT
CCCCCAAACAATGCCGGTGGCTGGTGCAATCCTCCCCAGCAACATTTTGA
CCTCTCTCAGCCTGTGTTTGAACAAATTGCTCA
back to top