FC921780
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 4.910e-23 Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187 M GACGYGNLY GYGTNTAALS+ LFN+G SCG C+ I C P+WC G ++ +TATN CP Sbjct: 44 MGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATNLCP 108 HSP 2 Score: 39.6614 bits (91), Expect = 4.910e-23 Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQI 278 GGWCNPP+ HFD+++P + QI Sbjct: 118 GGWCNPPRPHFDMAEPAWLQI 138
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 4.910e-23 Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187 M GACGYGNLY +GYG AALSTALFN G SCG C+ I C P WC G ++ +TATN CP Sbjct: 44 MGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCP 108 HSP 2 Score: 42.743 bits (99), Expect = 4.910e-23 Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQI 278 GGWCNPP+ HFD+SQP +E I Sbjct: 118 GGWCNPPRPHFDMSQPAWETI 138
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 8.308e-23 Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC----VNDPRWC-PPG---SIFVTATNFCPSK*CSP 205 M GACGYGN Y +GYGT+TAALS +F +G+SCGACFE++C D R C PP SI VTAT+ CP+ P Sbjct: 47 MGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALP 122 HSP 2 Score: 43.8986 bits (102), Expect = 8.308e-23 Identity = 17/22 (77.27%), Postives = 18/22 (81.82%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQIA 281 GGWCNPP HFDLSQP F +IA Sbjct: 126 GGWCNPPLHHFDLSQPAFLRIA 147
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 1.407e-22 Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187 M GACGYG+LY GYGTNTAALST LFN+G SCG C+ I C D R+C G S+ +TATN CP Sbjct: 51 MGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCP 115 HSP 2 Score: 40.4318 bits (93), Expect = 1.407e-22 Identity = 13/21 (61.90%), Postives = 19/21 (90.48%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQI 278 GGWCNPP+QHFD+++P + +I Sbjct: 125 GGWCNPPRQHFDMAEPAWLKI 145
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.032e-22 Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGS--IFVTATNFCP 187 M GACGYGN+Y GYG T ALSTALFN G +CG CF+++CV+ P C GS VTATN CP Sbjct: 48 MGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICP 110 HSP 2 Score: 41.9726 bits (97), Expect = 4.032e-22 Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQIA 281 GGWCNPP+ HFDL++P F +IA Sbjct: 120 GGWCNPPRVHFDLTKPAFMKIA 141
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-22 Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGS--IFVTATNFCP 187 +DGACGY + +EGYG T A+ST LF G CGAC+E++CV+ P C G+ + VTATN CP Sbjct: 59 LDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCP 122 HSP 2 Score: 45.4394 bits (106), Expect = 5.242e-22 Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQIA 281 GGWCNPP++HFDLS P F QIA Sbjct: 132 GGWCNPPREHFDLSMPAFLQIA 153
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 5.245e-22 Identity = 37/62 (59.68%), Postives = 41/62 (66.13%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187 M GACGYGNL+ GYG +TAALST LFN+G CG CF+I C P S VTATN CP Sbjct: 54 MGGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCP 115 HSP 2 Score: 40.817 bits (94), Expect = 5.245e-22 Identity = 13/22 (59.09%), Postives = 19/22 (86.36%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQIA 281 GGWCNPP+ HFD+++P F ++A Sbjct: 125 GGWCNPPRTHFDMAKPAFMKLA 146
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 8.874e-22 Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGS--IFVTATNFCP 187 M GACGYGNLY GYGT+TAALST LF +G CG C++++CV C GS I VTATN CP Sbjct: 54 MGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCP 116 HSP 2 Score: 42.3578 bits (98), Expect = 8.874e-22 Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQIA 281 GGWCNPP+ HFDLS+P F ++A Sbjct: 128 GGWCNPPRAHFDLSKPAFMRMA 149
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3) HSP 1 Score: 89.7373 bits (221), Expect = 3.308e-21 Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187 ++GACGYG+L + GYG TAALSTALFN+G SCGAC+EI C +P+ C GSI +TAT+ CP Sbjct: 63 LEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCP 124 HSP 2 Score: 31.187 bits (69), Expect = 3.308e-21 Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 3 Query: 222 WCNPPQQHFDLSQPVFEQIA 281 WC P +HFDLS P+F +IA Sbjct: 129 WCYLPNKHFDLSLPMFIKIA 148
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 7.289e-21 Identity = 42/65 (64.62%), Postives = 45/65 (69.23%), Query Frame = 2 Query: 2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVND--PRWCPPG-SIFVTATNFCP 187 M GACGYGNLY +GYG N AALST LFNNG SCG C+ I C D P C G +I VT TNFCP Sbjct: 40 MGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFCP 104 HSP 2 Score: 36.965 bits (84), Expect = 7.289e-21 Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 3 Query: 216 GGWCNPPQQHFDLSQPVFEQI 278 GGWCN + HFD+SQP +E I Sbjct: 112 GGWCNTTRPHFDMSQPAWENI 132 The following BLAST results are available for this feature:
BLAST of FC921780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921780 ID=FC921780; Name=FC921780; organism=Citrus sinensis; type=EST; length=283bpback to top |