FC921780

Overview
NameFC921780
Unique NameFC921780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length283
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.910e-23
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187
            M GACGYGNLY  GYGTNTAALS+ LFN+G SCG C+ I C     P+WC  G ++ +TATN CP
Sbjct:   44 MGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATNLCP 108          

HSP 2 Score: 39.6614 bits (91), Expect = 4.910e-23
Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP+ HFD+++P + QI
Sbjct:  118 GGWCNPPRPHFDMAEPAWLQI 138          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 4.910e-23
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187
            M GACGYGNLY +GYG   AALSTALFN G SCG C+ I C     P WC  G ++ +TATN CP
Sbjct:   44 MGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATNLCP 108          

HSP 2 Score: 42.743 bits (99), Expect = 4.910e-23
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP+ HFD+SQP +E I
Sbjct:  118 GGWCNPPRPHFDMSQPAWETI 138          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.308e-23
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC----VNDPRWC-PPG---SIFVTATNFCPSK*CSP 205
            M GACGYGN Y +GYGT+TAALS  +F +G+SCGACFE++C      D R C PP    SI VTAT+ CP+    P
Sbjct:   47 MGGACGYGNTYGQGYGTDTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALP 122          

HSP 2 Score: 43.8986 bits (102), Expect = 8.308e-23
Identity = 17/22 (77.27%), Postives = 18/22 (81.82%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP  HFDLSQP F +IA
Sbjct:  126 GGWCNPPLHHFDLSQPAFLRIA 147          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.407e-22
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQC--VNDPRWCPPG-SIFVTATNFCP 187
            M GACGYG+LY  GYGTNTAALST LFN+G SCG C+ I C    D R+C  G S+ +TATN CP
Sbjct:   51 MGGACGYGDLYSTGYGTNTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCP 115          

HSP 2 Score: 40.4318 bits (93), Expect = 1.407e-22
Identity = 13/21 (61.90%), Postives = 19/21 (90.48%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCNPP+QHFD+++P + +I
Sbjct:  125 GGWCNPPRQHFDMAEPAWLKI 145          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.032e-22
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGS--IFVTATNFCP 187
            M GACGYGN+Y  GYG  T ALSTALFN G +CG CF+++CV+ P  C  GS    VTATN CP
Sbjct:   48 MGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICP 110          

HSP 2 Score: 41.9726 bits (97), Expect = 4.032e-22
Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP+ HFDL++P F +IA
Sbjct:  120 GGWCNPPRVHFDLTKPAFMKIA 141          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-22
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGS--IFVTATNFCP 187
            +DGACGY +  +EGYG  T A+ST LF  G  CGAC+E++CV+ P  C  G+  + VTATN CP
Sbjct:   59 LDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCP 122          

HSP 2 Score: 45.4394 bits (106), Expect = 5.242e-22
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP++HFDLS P F QIA
Sbjct:  132 GGWCNPPREHFDLSMPAFLQIA 153          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.245e-22
Identity = 37/62 (59.68%), Postives = 41/62 (66.13%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187
            M GACGYGNL+  GYG +TAALST LFN+G  CG CF+I C   P      S  VTATN CP
Sbjct:   54 MGGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATNLCP 115          

HSP 2 Score: 40.817 bits (94), Expect = 5.245e-22
Identity = 13/22 (59.09%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP+ HFD+++P F ++A
Sbjct:  125 GGWCNPPRTHFDMAKPAFMKLA 146          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.874e-22
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGS--IFVTATNFCP 187
            M GACGYGNLY  GYGT+TAALST LF +G  CG C++++CV     C  GS  I VTATN CP
Sbjct:   54 MGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCP 116          

HSP 2 Score: 42.3578 bits (98), Expect = 8.874e-22
Identity = 15/22 (68.18%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQIA 281
            GGWCNPP+ HFDLS+P F ++A
Sbjct:  128 GGWCNPPRAHFDLSKPAFMRMA 149          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 3.308e-21
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVNDPRWCPPGSIFVTATNFCP 187
            ++GACGYG+L + GYG  TAALSTALFN+G SCGAC+EI C  +P+ C  GSI +TAT+ CP
Sbjct:   63 LEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCP 124          

HSP 2 Score: 31.187 bits (69), Expect = 3.308e-21
Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:  222 WCNPPQQHFDLSQPVFEQIA 281
            WC  P +HFDLS P+F +IA
Sbjct:  129 WCYLPNKHFDLSLPMFIKIA 148          
BLAST of FC921780 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 7.289e-21
Identity = 42/65 (64.62%), Postives = 45/65 (69.23%), Query Frame = 2
Query:    2 MDGACGYGNLYREGYGTNTAALSTALFNNGMSCGACFEIQCVND--PRWCPPG-SIFVTATNFCP 187
            M GACGYGNLY +GYG N AALST LFNNG SCG C+ I C  D  P  C  G +I VT TNFCP
Sbjct:   40 MGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNFCP 104          

HSP 2 Score: 36.965 bits (84), Expect = 7.289e-21
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = 3
Query:  216 GGWCNPPQQHFDLSQPVFEQI 278
            GGWCN  + HFD+SQP +E I
Sbjct:  112 GGWCNTTRPHFDMSQPAWENI 132          
The following BLAST results are available for this feature:
BLAST of FC921780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EXP25_ORYSJ4.910e-2361.54Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ4.910e-2360.00Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ORYSJ8.308e-2355.26Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ1.407e-2263.08Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP18_ARATH4.032e-2260.94Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP32_ORYSJ5.242e-2253.13Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA7_ARATH5.245e-2259.68Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP30_ORYSJ8.874e-2260.94Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP21_ARATH3.308e-2162.90Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP18_ORYSJ7.289e-2164.62Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionC06052C04T7 RindPdigS Citrus sinensis cDNA clone C06052C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921780 ID=FC921780; Name=FC921780; organism=Citrus sinensis; type=EST; length=283bp
CATGGATGGCGCTTGTGGGTATGGAAACTTATACCGCGAGGGATATGGGA
CAAACACCGCAGCTCTGAGCACTGCGCTTTTCAACAATGGCATGAGCTGT
GGGGCTTGTTTTGAGATCCAGTGTGTTAATGACCCAAGATGGTGCCCTCC
GGGCTCCATTTTTGTTACTGCCACAAATTTTTGCCCCTCCAAATAATGCT
CCCCCAAACAATGCCGGTGGCTGGTGCAATCCTCCCCAGCAACATTTTGA
CCTCTCTCAGCCTGTGTTTGAACAAATTGCTCA
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