EL492653

Overview
NameEL492653
Unique NameEL492653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS2_CRIGR (40S ribosomal protein S2 (Fragment) OS=Cricetulus griseus GN=RPS2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.453e-32
Identity = 62/73 (84.93%), Postives = 70/73 (95.89%), Query Frame = -2
Query:  101 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 319
            KCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L
Sbjct:   82 KCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLL 154          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS2_BOVIN (40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.453e-32
Identity = 62/73 (84.93%), Postives = 70/73 (95.89%), Query Frame = -2
Query:  101 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 319
            KCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPCKVTG+CGSV VR++PAPRG GIV+A VPKK+L
Sbjct:  142 KCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLL 214          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS2_DICDI (40S ribosomal protein S2 OS=Dictyostelium discoideum GN=rps2 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.923e-31
Identity = 63/74 (85.14%), Postives = 68/74 (91.89%), Query Frame = -2
Query:   98 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 319
            KC+KEVATAI GAI+ AKLSVIPVRRGYWGNK+G PHTVP KVTGKCGSV VR+VPAPRG GIVAARVPKK+LQ
Sbjct:  129 KCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQ 202          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS2_CAEEL (40S ribosomal protein S2 OS=Caenorhabditis elegans GN=rps-2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.895e-30
Identity = 60/73 (82.19%), Postives = 67/73 (91.78%), Query Frame = -2
Query:  101 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 319
            KCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV VR++PAPRG GIV+A VPKK+L
Sbjct:  138 KCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLL 210          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS2_SCHPO (40S ribosomal protein S2 OS=Schizosaccharomyces pombe GN=rps2 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.961e-29
Identity = 62/92 (67.39%), Postives = 75/92 (81.52%), Query Frame = -2
Query:   44 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQS*LSIVRCFHILLRGSTK 319
            KC+KEVATAIRGAII+ KLS++P+RRGYWG  +G PHTVP KV+GKCGSVTVR+VPAPRGAG+VAA V K+ LQ  L+ +   +   RGSTK
Sbjct:  115 KCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQ--LAGIEDCYTQSRGSTK 204          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS2_LEIAM (40S ribosomal protein S2 OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.451e-27
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = -2
Query:   98 SKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 322
            ++  KEV+ AIR ++I AKL+++PVRRGYWGNKIG PHT+P KVTGKCGSV VR+VPAPRG GIVAA VPKK+L+
Sbjct:  127 ARVGKEVSLAIRASMIAAKLNIVPVRRGYWGNKIGEPHTIPMKVTGKCGSVAVRLVPAPRGTGIVAAPVPKKILE 201          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS2_YEAST (40S ribosomal protein S2 OS=Saccharomyces cerevisiae GN=RPS2 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 7.711e-24
Identity = 50/74 (67.57%), Postives = 62/74 (83.78%), Query Frame = -2
Query:   98 KCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 319
            K +KEVA AIR  II+AKLSVIP+RRGYWG  +G+PH++  K TGKCGSVTVR++PAPRG+GIVA+   KK+LQ
Sbjct:  116 KTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQ 189          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METKA (30S ribosomal protein S5P OS=Methanopyrus kandleri GN=rps5p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.543e-15
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = -2
Query:   98 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 313
            ++EV  AIR AI  AKL++I VRRG   W    GRPH++P ++TGKCGSV + + PAPRG G+VA    +KVL+
Sbjct:   93 AREVGPAIRAAIDRAKLNIIKVRRGCGSWECGCGRPHSIPFEITGKCGSVRITLKPAPRGTGLVAGETAQKVLE 166          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_THEPD (30S ribosomal protein S5P OS=Thermofilum pendens (strain Hrk 5) GN=rps5p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.998e-13
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = -2
Query:   98 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 313
            S+++  AI  A   AKL+++PVRRG   W    G PH++P KV GK GSV + ++PAP+G G+VA+ V K VL+
Sbjct:   88 SRQIGIAIEKATRRAKLNIVPVRRGCGSWECLCGEPHSIPFKVEGKAGSVKIELIPAPKGVGLVASDVAKTVLR 161          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METVS (30S ribosomal protein S5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps5p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 40/73 (54.79%), Postives = 46/73 (63.01%), Query Frame = -2
Query:  101 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 313
            SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL
Sbjct:   99 SKEVGPAIRKAIAQAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGTCGSVKVELLPAPRGVGLVAGNVAKAVL 171          
The following BLAST results are available for this feature:
BLAST of EL492653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RS2_CRIGR3.453e-3284.9340S ribosomal protein S2 (Fragment) OS=Cricetulus ... [more]
RS2_BOVIN3.453e-3284.9340S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=... [more]
RS2_DICDI2.923e-3185.1440S ribosomal protein S2 OS=Dictyostelium discoide... [more]
RS2_CAEEL1.895e-3082.1940S ribosomal protein S2 OS=Caenorhabditis elegans... [more]
RS2_SCHPO7.961e-2967.3940S ribosomal protein S2 OS=Schizosaccharomyces po... [more]
RS2_LEIAM7.451e-2770.6740S ribosomal protein S2 OS=Leishmania amazonensis... [more]
RS2_YEAST7.711e-2467.5740S ribosomal protein S2 OS=Saccharomyces cerevisi... [more]
RS5_METKA6.543e-1552.7030S ribosomal protein S5P OS=Methanopyrus kandleri... [more]
RS5_THEPD7.998e-1347.3030S ribosomal protein S5P OS=Thermofilum pendens (... [more]
RS5_METVS1.045e-1254.7930S ribosomal protein S5P OS=Methanococcus vanniel... [more]

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Properties
Property NameValue
Genbank descriptionC5000 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC5000, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492653 ID=EL492653; Name=EL492653; organism=Citrus sinensis; type=EST; length=335bp
AGACACTCAAAGGTTGTCCTTGACAAAGTTTACTCAAGTAGATCTTGGTC
GACCCACGCAGTAAGATGTGAAAACATCGTACAATACTCAGTCAAGACTG
CAGCACCTTCTTTGGAACCCTAGCCGCCACAATTCCGGCACCACGTGGGG
CCGGAACCATCCTCACGGTGACACTGCCACACTTACCGGTCACCTTACAC
GGCACGGTGTGTGGCCTCCCGATCTTGTTACCCCAGTAACCCCTTCTCAC
CGGAATCACCGACAGCTTCGCCAATATGATAGCGCCACGGATGGCAGTGG
CAACCTCTTTGGAGCACTTACTCAGGACTCATCAC
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