EL492653

Overview
NameEL492653
Unique NameEL492653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METVA (30S ribosomal protein S5P OS=Methanococcus vannielii GN=rps5p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 40/73 (54.79%), Postives = 46/73 (63.01%), Query Frame = -2
Query:  101 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 313
            SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL
Sbjct:   99 SKEVGPAIRKAIAQAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGTCGSVKVELLPAPRGVGLVAGNVAKAVL 171          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METMP (30S ribosomal protein S5P OS=Methanococcus maripaludis GN=rps5p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.364e-12
Identity = 40/73 (54.79%), Postives = 46/73 (63.01%), Query Frame = -2
Query:  101 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 313
            SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL
Sbjct:   99 SKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVL 171          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METM6 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps5p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.364e-12
Identity = 40/73 (54.79%), Postives = 46/73 (63.01%), Query Frame = -2
Query:  101 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 313
            SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL
Sbjct:  103 SKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVL 175          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METM5 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps5p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.364e-12
Identity = 40/73 (54.79%), Postives = 46/73 (63.01%), Query Frame = -2
Query:  101 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 313
            SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL
Sbjct:  103 SKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFAAKGACGSVKVELLPAPRGVGLVAGNVAKAVL 175          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_PYRFU (30S ribosomal protein S5P OS=Pyrococcus furiosus GN=rps5p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = -2
Query:   98 KEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 310
            KEV  AIR AI  AKL++I ++RG   W  +  RPH+VP  V GK GSV VR++P PRG G+V   V KK+L+
Sbjct:  104 KEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILR 176          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METMA (30S ribosomal protein S5P OS=Methanosarcina mazei GN=rps5p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = -2
Query:   98 EVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 307
            +V  AIR AI  AKL++  +RRG   W    G PHTVP +VTGK GSV+V ++PAPRG GI A     KVL+
Sbjct:   92 QVGPAIRKAIDAAKLNITYIRRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLE 163          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METM7 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps5p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 40/73 (54.79%), Postives = 46/73 (63.01%), Query Frame = -2
Query:  101 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 313
            SKEV  AIR AI  AKLS+I VR G   W    G PH++P    G CGSV V ++PAPRG G+VA  V K VL
Sbjct:  103 SKEVGPAIRKAIAHAKLSLIKVRIGCGSWECGCGYPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAKAVL 175          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METAC (30S ribosomal protein S5P OS=Methanosarcina acetivorans GN=rps5p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.782e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = -2
Query:   98 EVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 307
            +V  AIR AI  AKL++  +RRG   W    G PHTVP +VTGK GSV+V ++PAPRG GI A     KVL+
Sbjct:   92 QVGPAIRKAIDAAKLNITYIRRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLE 163          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_PYRHO (30S ribosomal protein S5P OS=Pyrococcus horikoshii GN=rps5p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.969e-12
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = -2
Query:   98 KEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 310
            +EV  AIR AI  AKL++I ++RG   W  +  RPH+VP  V GK GSV VR++P PRG G+V   V KK+L+
Sbjct:  104 REVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILR 176          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_META3 (30S ribosomal protein S5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps5p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.184e-12
Identity = 39/73 (53.42%), Postives = 45/73 (61.64%), Query Frame = -2
Query:  101 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 313
            SKEV  AIR AI  AKLS+I VR G   W    G  H++P    G CGSV V ++PAPRG G+VA  V K VL
Sbjct:   96 SKEVGPAIRKAIAHAKLSLIKVRTGCGSWECGCGTAHSIPFAAKGSCGSVKVELLPAPRGVGLVAGNVAKAVL 168          
The following BLAST results are available for this feature:
BLAST of EL492653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RS5_METVA1.045e-1254.7930S ribosomal protein S5P OS=Methanococcus vanniel... [more]
RS5_METMP1.364e-1254.7930S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METM61.364e-1254.7930S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METM51.364e-1254.7930S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_PYRFU1.782e-1252.0530S ribosomal protein S5P OS=Pyrococcus furiosus G... [more]
RS5_METMA1.782e-1252.7830S ribosomal protein S5P OS=Methanosarcina mazei ... [more]
RS5_METM71.782e-1254.7930S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METAC1.782e-1252.7830S ribosomal protein S5P OS=Methanosarcina acetiv... [more]
RS5_PYRHO3.969e-1250.6830S ribosomal protein S5P OS=Pyrococcus horikoshii... [more]
RS5_META35.184e-1253.4230S ribosomal protein S5P OS=Methanococcus aeolicu... [more]

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Properties
Property NameValue
Genbank descriptionC5000 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC5000, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492653 ID=EL492653; Name=EL492653; organism=Citrus sinensis; type=EST; length=335bp
AGACACTCAAAGGTTGTCCTTGACAAAGTTTACTCAAGTAGATCTTGGTC
GACCCACGCAGTAAGATGTGAAAACATCGTACAATACTCAGTCAAGACTG
CAGCACCTTCTTTGGAACCCTAGCCGCCACAATTCCGGCACCACGTGGGG
CCGGAACCATCCTCACGGTGACACTGCCACACTTACCGGTCACCTTACAC
GGCACGGTGTGTGGCCTCCCGATCTTGTTACCCCAGTAACCCCTTCTCAC
CGGAATCACCGACAGCTTCGCCAATATGATAGCGCCACGGATGGCAGTGG
CAACCTCTTTGGAGCACTTACTCAGGACTCATCAC
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