EL492653

Overview
NameEL492653
Unique NameEL492653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_PYRAB (30S ribosomal protein S5P OS=Pyrococcus abyssi GN=rps5p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.843e-12
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = -2
Query:   98 KEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 310
            +EV  AIR AI  AKL++I ++RG   W  +  RPH+VP  V GK GSV V+++P PRG G+V   V KK+L+
Sbjct:  104 REVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILR 176          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METJA (30S ribosomal protein S5P OS=Methanocaldococcus jannaschii GN=rps5p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.843e-12
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = -2
Query:  101 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 313
            +KEV  AIR AI  AK ++I V+RG   W    G PH++P K  GKCGS  + ++PAP+G G+VA  V K VL
Sbjct:   91 AKEVGPAIRKAIAQAKKNIIRVKRGCGSWECGCGTPHSIPYKGYGKCGSTAIEILPAPKGVGLVAGDVAKAVL 163          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METBF (30S ribosomal protein S5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps5p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.843e-12
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = -2
Query:   98 EVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 307
            +V  AIR AI  AKL +  + RG   W    G PHTVP +VTGK GSV+V ++PAPRG GI A     KVL+
Sbjct:   92 QVGPAIRKAIDAAKLDITYIHRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLE 163          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METTH (30S ribosomal protein S5P OS=Methanobacterium thermoautotrophicum GN=rps5p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = -2
Query:   98 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 313
            ++EV  AIR A+  AK ++I VRRG   WG   GR HTVP KV+GK GSV V ++PAP G G+    V K +++
Sbjct:   93 AREVGPAIRKAVDDAKFNIIKVRRGCGDWGCVCGREHTVPFKVSGKSGSVRVTLIPAPGGVGLAIGDVGKTIMR 166          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METLZ (30S ribosomal protein S5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps5p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.155e-11
Identity = 37/71 (52.11%), Postives = 47/71 (66.20%), Query Frame = -2
Query:  101 EVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 307
            +V TAI+ AI  AKL+++ VRRG   W    G  H+VP +VTGK GSV V + PAP+G G+V   V KKVL
Sbjct:   93 QVGTAIKKAITNAKLNIVKVRRGCGSWECGCGMKHSVPMEVTGKAGSVAVTLKPAPKGIGLVTGDVGKKVL 163          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_PYRAR (30S ribosomal protein S5P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps5p PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.508e-11
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = -2
Query:   32 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQS*LSIVRCFHILLRGSTKIYLS 313
            +++V  AI  A+  AKL++IPVRRG   W      PH+VP  V GK GSV V ++PAP+G G+VA  V K VL+  L+ V+      RG T+  L+
Sbjct:   92 ARQVRQAIEKAVREAKLNLIPVRRGCGSWKCSCDEPHSVPFVVKGKSGSVEVTLIPAPKGVGLVAGDVAKAVLR--LAGVKDVWTHTRGDTRTTLN 185          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_THEVO (30S ribosomal protein S5P OS=Thermoplasma volcanium GN=rps5p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.970e-11
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = -2
Query:   98 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 313
            SKE A AIR A+I AKL+++ +RRG   W    GR HT+P  V GK GSV + + PAPRG G+    V K +L+
Sbjct:   88 SKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLPFLVEGKSGSVRITLKPAPRGVGLAVGNVAKIILR 161          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_SULSO (30S ribosomal protein S5P OS=Sulfolobus solfataricus GN=rps5p PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.970e-11
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = -2
Query:  101 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 313
            +K++  AI+ AI  AK+++IPVRRG   W    G PH++P KV GK GSV V ++PAP+G G+V   V K +L
Sbjct:   96 AKQLRVAIQKAIRDAKMNIIPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVDLLPAPKGTGLVVGSVLKTLL 168          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_SULIN (30S ribosomal protein S5P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps5p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.970e-11
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = -2
Query:  101 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 313
            +K++  AI+ AI  AK++++PVRRG   W    G PH++P KV GK GSV V ++PAP+G G+V   V K +L
Sbjct:   96 AKQLRVAIQKAIRDAKMNILPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVNLLPAPKGTGLVVGSVLKTLL 168          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METS3 (30S ribosomal protein S5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps5p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.970e-11
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = -2
Query:  101 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 313
            +KEV  AIR A+  AK ++I VRRG   WG   G+ HTVP KV GK  SV+V ++PAP G G+V   V K +L
Sbjct:   91 AKEVGPAIRKAVDNAKYNLIKVRRGCGDWGCVCGKEHTVPFKVQGKASSVSVSLMPAPAGVGLVVGDVGKTIL 163          
The following BLAST results are available for this feature:
BLAST of EL492653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RS5_PYRAB8.843e-1249.3230S ribosomal protein S5P OS=Pyrococcus abyssi GN=... [more]
RS5_METJA8.843e-1249.3230S ribosomal protein S5P OS=Methanocaldococcus ja... [more]
RS5_METBF8.843e-1251.3930S ribosomal protein S5P OS=Methanosarcina barker... [more]
RS5_METTH1.155e-1148.6530S ribosomal protein S5P OS=Methanobacterium ther... [more]
RS5_METLZ1.155e-1152.1130S ribosomal protein S5P OS=Methanocorpusculum la... [more]
RS5_PYRAR1.508e-1143.7530S ribosomal protein S5P OS=Pyrobaculum arsenatic... [more]
RS5_THEVO1.970e-1148.6530S ribosomal protein S5P OS=Thermoplasma volcaniu... [more]
RS5_SULSO1.970e-1147.9530S ribosomal protein S5P OS=Sulfolobus solfataric... [more]
RS5_SULIN1.970e-1146.5830S ribosomal protein S5P OS=Sulfolobus islandicus... [more]
RS5_METS31.970e-1150.6830S ribosomal protein S5P OS=Methanobrevibacter sm... [more]

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Properties
Property NameValue
Genbank descriptionC5000 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC5000, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492653 ID=EL492653; Name=EL492653; organism=Citrus sinensis; type=EST; length=335bp
AGACACTCAAAGGTTGTCCTTGACAAAGTTTACTCAAGTAGATCTTGGTC
GACCCACGCAGTAAGATGTGAAAACATCGTACAATACTCAGTCAAGACTG
CAGCACCTTCTTTGGAACCCTAGCCGCCACAATTCCGGCACCACGTGGGG
CCGGAACCATCCTCACGGTGACACTGCCACACTTACCGGTCACCTTACAC
GGCACGGTGTGTGGCCTCCCGATCTTGTTACCCCAGTAACCCCTTCTCAC
CGGAATCACCGACAGCTTCGCCAATATGATAGCGCCACGGATGGCAGTGG
CAACCTCTTTGGAGCACTTACTCAGGACTCATCAC
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