EL492653

Overview
NameEL492653
Unique NameEL492653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length335
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_IGNH4 (30S ribosomal protein S5P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps5p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.573e-11
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = -2
Query:   98 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 313
            +K++  AI+ A+  AKL++ PVRRG   W    G PH+VP  V GK GSV V + PAPRG G+VA  V K VL+
Sbjct:   93 AKQMRFAIQKALANAKLNITPVRRGCGSWECTCGEPHSVPFTVRGKSGSVEVILKPAPRGTGLVAGDVAKAVLR 166          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_PYRIL (30S ribosomal protein S5P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps5p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.360e-11
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = -2
Query:   32 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQS*LSIVRCFHILLRGSTKIYLS 313
            +K+V  AI  A+  AKL++ PVRRG   W      PH+VP  V GK GSV V ++PAP+G G+VA  V K VL+  L+ ++      RG T+  L+
Sbjct:   92 AKQVRQAIEKAVREAKLNLTPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEVTLIPAPKGVGLVAGDVAKVVLR--LAGIKDVWTQTRGDTRTTLN 185          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_PYRCJ (30S ribosomal protein S5P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.360e-11
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = -2
Query:   32 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQS*LSIVRCFHILLRGSTKIYLS 313
            S++V  AI  A   AKL++ PVRRG   W      PH+VP  V+GK GSV V ++PAP+G G+VA  V K VL+  L+ ++      RG T+  L+
Sbjct:   92 SRQVRQAIEKATREAKLNITPVRRGCGSWKCSCDEPHSVPFVVSGKSGSVEVTLIPAPKGVGLVAGDVAKVVLR--LAGIKDVWTKTRGDTRTTLN 185          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_PYRKO (30S ribosomal protein S5P OS=Pyrococcus kodakaraensis GN=rps5p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.389e-11
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = -2
Query:  101 KEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 310
            +EV  AIR AI  AK+++I ++RG   W  +  RPH++P  V GK GSV V+++P PRG G+V   V KK+L
Sbjct:  103 REVGIAIRKAINYAKMNIIEIKRGCGSWECRCRRPHSIPFAVEGKEGSVRVKLMPGPRGLGLVIGDVGKKIL 174          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_HYPBU (30S ribosomal protein S5P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps5p PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.389e-11
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = -2
Query:   44 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQS*LSIVRCFHILLRGSTK 313
            ++++A AI  AI  AKL++IPVRRG   W      PH+VP  V GK GSV V + PAPRG G+VA    K VL+  L+ +R      +G T+
Sbjct:   96 ARQLAVAIEKAIRNAKLNIIPVRRGCGSWECLCSEPHSVPFTVRGKSGSVEVILKPAPRGTGLVAGDAAKVVLR--LAGIRDVWSFTKGDTR 185          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_THEAC (30S ribosomal protein S5P OS=Thermoplasma acidophilum GN=rps5p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.732e-11
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = -2
Query:  101 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 313
            SKE A AIR A+I AKL+++ +RRG   W    GR HT+P  V GK GSV + + PAPRG G+    V + +L
Sbjct:   88 SKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLPFLVQGKSGSVRITLKPAPRGVGLAVGDVARTIL 160          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METST (30S ribosomal protein S5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps5p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.732e-11
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = -2
Query:  101 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVL 313
            S+EV  AIR A+  AK ++I VRRG   WG   GR HTVP K+ GK  SV+  ++PAP G G+    V K +L
Sbjct:  105 SQEVGPAIRKAVDAAKYNLIKVRRGCGDWGCGCGRRHTVPFKIEGKMSSVSATLIPAPAGVGLAIGNVGKTIL 177          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_PYRAE (30S ribosomal protein S5P OS=Pyrobaculum aerophilum GN=rps5p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.486e-11
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = -2
Query:   32 SKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQS*LSIVRCFHILLRGSTKIYLS 313
            +++V  AI  A   AKL+++PVRRG   W      PH+VP  V GK GSV + ++PAP+G G+VA  V K VL+  L+ ++      RG T+  L+
Sbjct:  108 ARQVRQAIEKATREAKLNLVPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEITLIPAPKGVGLVAGDVAKAVLR--LAGIKDVWTKTRGDTRTTLN 201          
BLAST of EL492653 vs. ExPASy Swiss-Prot
Match: RS5_METBU (30S ribosomal protein S5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps5p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.777e-11
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = -2
Query:   98 EVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQ 307
            +V  AIR AI  AK+++  ++RG   W    G PHTVP +V GK GSVTV + PAPRG G+ A    +KVL+
Sbjct:   94 QVGPAIRKAIDNAKINITRIKRGCGSWECGCGLPHTVPSEVNGKAGSVTVVLKPAPRGLGLAAGGTARKVLE 165          
The following BLAST results are available for this feature:
BLAST of EL492653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RS5_IGNH42.573e-1150.0030S ribosomal protein S5P OS=Ignicoccus hospitalis... [more]
RS5_PYRIL3.360e-1142.7130S ribosomal protein S5P OS=Pyrobaculum islandicu... [more]
RS5_PYRCJ3.360e-1142.7130S ribosomal protein S5P OS=Pyrobaculum calidifon... [more]
RS5_PYRKO4.389e-1147.2230S ribosomal protein S5P OS=Pyrococcus kodakaraen... [more]
RS5_HYPBU4.389e-1144.5730S ribosomal protein S5P OS=Hyperthermus butylicu... [more]
RS5_THEAC5.732e-1147.9530S ribosomal protein S5P OS=Thermoplasma acidophi... [more]
RS5_METST5.732e-1147.9530S ribosomal protein S5P OS=Methanosphaera stadtm... [more]
RS5_PYRAE7.486e-1140.6330S ribosomal protein S5P OS=Pyrobaculum aerophilu... [more]
RS5_METBU9.777e-1148.6130S ribosomal protein S5P OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionC5000 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC5000, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492653 ID=EL492653; Name=EL492653; organism=Citrus sinensis; type=EST; length=335bp
AGACACTCAAAGGTTGTCCTTGACAAAGTTTACTCAAGTAGATCTTGGTC
GACCCACGCAGTAAGATGTGAAAACATCGTACAATACTCAGTCAAGACTG
CAGCACCTTCTTTGGAACCCTAGCCGCCACAATTCCGGCACCACGTGGGG
CCGGAACCATCCTCACGGTGACACTGCCACACTTACCGGTCACCTTACAC
GGCACGGTGTGTGGCCTCCCGATCTTGTTACCCCAGTAACCCCTTCTCAC
CGGAATCACCGACAGCTTCGCCAATATGATAGCGCCACGGATGGCAGTGG
CAACCTCTTTGGAGCACTTACTCAGGACTCATCAC
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