CK937544

Overview
NameCK937544
Unique NameCK937544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.097e-14
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPS 447
            KLFV G+SF T E+ L   FS++GQ+ E  ++ D+   RS+G+G+VTF   E+A++A+  MNGK +DGR + VD    S
Sbjct:    7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQAGKS 85          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.044e-14
Identity = 43/108 (39.81%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  130 IFRNGAVSHSNLKISAAQLVSYRGFTSKLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVD--NVRPS 447
            + R    S+ N+ +++  L S R  ++KLF+ G+S+ T +  L DAF+ FG V +A +I D+   RS+G+G+V F+ E  A  A++EM+GK L+GR + V+  N RPS
Sbjct:   10 LLRQNISSNGNVPVTS-MLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.177e-13
Identity = 32/79 (40.51%), Postives = 55/79 (69.62%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPS 447
            KLF+ G++F T E+ L  AF+++G+++E  ++ D+   RS+G+G+VTF   ++A++A+  MNGK +DGR + VD    S
Sbjct:    6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQAGKS 84          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.621e-13
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVR 441
            + FV G++++T +E L   FSQFG V ++ II D+   RS+G+G+VTF  E+  ++A+ EMNGK LDGRV+ V+  +
Sbjct:    7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.621e-13
Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  175 AAQLVSYRGFTSKLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVR 441
            AA  V YR      FV G++++T  E L  AF+ FGQV ++ +ITD+   RS+G+G+VTFS+E+   +A+  MNGK LDGR + V+  +
Sbjct:    2 AAADVEYR-----CFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.961e-13
Identity = 36/80 (45.00%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  175 AAQLVSYRGFTSKLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDG 414
            ++ L S R  ++KL++ G+S  T E  L DAFS F  VTEA ++T+K   RS+GYG+V F +E+ A +A++ MNG+ L+G
Sbjct:   20 SSMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNG 99          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.961e-13
Identity = 33/77 (42.86%), Postives = 54/77 (70.13%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVR 441
            + FV G++++T +E L  AFSQFG +T++ II D+   RS+G+G+VTF  E+  ++A+  MNG+ LDGR + V+  +
Sbjct:    7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.699e-12
Identity = 36/89 (40.45%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  175 AAQLVSYRGFTSKLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVR 441
            AA  V YR      FV G++++T+ E L +AF+ +G++ ++ +ITD+   RS+G+G+VTFS+E    +A+  MNGK LDGR + V+  +
Sbjct:    2 AAADVEYR-----CFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.898e-12
Identity = 33/77 (42.86%), Postives = 53/77 (68.83%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVR 441
            + FV G++++T +  L   FSQFG+V ++ II D+   RS+G+G+VTF  E+  ++A+ EMNGK LDGR + V+  +
Sbjct:    7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.944e-12
Identity = 36/105 (34.29%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDN-VRPS----RRYNTDVPLARQPPQSAEDSR 510
            KLF+ G++  T E+ L   F ++G++ E  ++ D+  N+S+G+ +VTF +  +A++A  +MNGK LDG+ + V+   +PS    RR     P +R PP+     R
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGR 113          
The following BLAST results are available for this feature:
BLAST of CK937544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
CIRBP_RANCA3.097e-1445.57Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
GRP2_ARATH4.044e-1439.81Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
CIRBA_XENLA1.177e-1340.51Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
GRP8_ARATH2.621e-1345.45Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP2_SORBI2.621e-1343.82Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
RT19_ARATH9.961e-1345.0040S ribosomal protein S19, mitochondrial OS=Arabid... [more]
GRP1_DAUCA9.961e-1342.86Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRPA_MAIZE1.699e-1240.45Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP10_BRANA2.898e-1242.86Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
HNRPG_PANTR4.944e-1234.29Heterogeneous nuclear ribonucleoprotein G OS=Pan t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004779_C11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937544 ID=CK937544; Name=CK937544; organism=Citrus sinensis; type=EST; length=639bp
GGGGATTCAATTTTGATCACAAACATGGCATATAACTGAAGTACTAAATT
GGGCTTCTTCTGCTCACCTGTTGCGTTGTTATTTATTTACTCTCCCTTGC
AAAAATGGCGGCGCTAATACGAAAAAAACATTTTCAGAAATGGCGCAGTC
TCTCATTCAAACTTGAAAATTTCAGCAGCCCAACTCGTATCTTACAGAGG
ATTCACTTCTAAGCTTTTCGTCAAAGGCGTATCTTTCTCAACCACTGAAG
AGATGTTAGCTGATGCTTTTTCACAATTTGGCCAAGTCACTGAGGCAACA
ATAATAACAGATAAAGGTAAGAACAGATCAAAAGGTTATGGGTACGTGAC
TTTCAGCACAGAAGAGGAAGCCCAAAATGCCTTGACAGAGATGAATGGGA
AGTTACTAGATGGACGAGTCCTTTTTGTGGACAATGTAAGACCCAGCAGA
CGTTACAATACTGATGTGCCACTTGCGAGACAACCTCCCCAGTCAGCTGA
AGATAGCCGACATTAAATTGTTTTACATTTCATATGAATATATTGCGGTG
TCCTTAATGCTGGATACATGGGTGCTCAAATCATTTCATCTATAACAAAA
TATATTTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top