CK937544
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.097e-14 Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1 Query: 211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPS 447 KLFV G+SF T E+ L FS++GQ+ E ++ D+ RS+G+G+VTF E+A++A+ MNGK +DGR + VD S Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQAGKS 85
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.044e-14 Identity = 43/108 (39.81%), Postives = 69/108 (63.89%), Query Frame = 1 Query: 130 IFRNGAVSHSNLKISAAQLVSYRGFTSKLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVD--NVRPS 447 + R S+ N+ +++ L S R ++KLF+ G+S+ T + L DAF+ FG V +A +I D+ RS+G+G+V F+ E A A++EM+GK L+GR + V+ N RPS Sbjct: 10 LLRQNISSNGNVPVTS-MLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.177e-13 Identity = 32/79 (40.51%), Postives = 55/79 (69.62%), Query Frame = 1 Query: 211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPS 447 KLF+ G++F T E+ L AF+++G+++E ++ D+ RS+G+G+VTF ++A++A+ MNGK +DGR + VD S Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQAGKS 84
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.621e-13 Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = 1 Query: 211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVR 441 + FV G++++T +E L FSQFG V ++ II D+ RS+G+G+VTF E+ ++A+ EMNGK LDGRV+ V+ + Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.621e-13 Identity = 39/89 (43.82%), Postives = 58/89 (65.17%), Query Frame = 1 Query: 175 AAQLVSYRGFTSKLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVR 441 AA V YR FV G++++T E L AF+ FGQV ++ +ITD+ RS+G+G+VTFS+E+ +A+ MNGK LDGR + V+ + Sbjct: 2 AAADVEYR-----CFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 9.961e-13 Identity = 36/80 (45.00%), Postives = 55/80 (68.75%), Query Frame = 1 Query: 175 AAQLVSYRGFTSKLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDG 414 ++ L S R ++KL++ G+S T E L DAFS F VTEA ++T+K RS+GYG+V F +E+ A +A++ MNG+ L+G Sbjct: 20 SSMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNG 99
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 9.961e-13 Identity = 33/77 (42.86%), Postives = 54/77 (70.13%), Query Frame = 1 Query: 211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVR 441 + FV G++++T +E L AFSQFG +T++ II D+ RS+G+G+VTF E+ ++A+ MNG+ LDGR + V+ + Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.699e-12 Identity = 36/89 (40.45%), Postives = 59/89 (66.29%), Query Frame = 1 Query: 175 AAQLVSYRGFTSKLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVR 441 AA V YR FV G++++T+ E L +AF+ +G++ ++ +ITD+ RS+G+G+VTFS+E +A+ MNGK LDGR + V+ + Sbjct: 2 AAADVEYR-----CFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.898e-12 Identity = 33/77 (42.86%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVR 441 + FV G++++T + L FSQFG+V ++ II D+ RS+G+G+VTF E+ ++A+ EMNGK LDGR + V+ + Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.944e-12 Identity = 36/105 (34.29%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDN-VRPS----RRYNTDVPLARQPPQSAEDSR 510 KLF+ G++ T E+ L F ++G++ E ++ D+ N+S+G+ +VTF + +A++A +MNGK LDG+ + V+ +PS RR P +R PP+ R Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGR 113 The following BLAST results are available for this feature:
BLAST of CK937544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >CK937544 ID=CK937544; Name=CK937544; organism=Citrus sinensis; type=EST; length=639bpback to top |