CK937544
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3) HSP 1 Score: 71.2478 bits (173), Expect = 4.944e-12 Identity = 36/105 (34.29%), Postives = 62/105 (59.05%), Query Frame = 1 Query: 211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDN-VRPS----RRYNTDVPLARQPPQSAEDSR 510 KLF+ G++ T E+ L F ++G++ E ++ D+ N+S+G+ +VTF + +A++A +MNGK LDG+ + V+ +PS RR P +R PP+ R Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGR 113
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.457e-12 Identity = 32/80 (40.00%), Postives = 56/80 (70.00%), Query Frame = 1 Query: 211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPSR 450 + FV G+ ++T ++ L +AFS++G V ++ IITD+ RS+G+G+VTF+++E + A+ MNG+ LDGR + V+ + R Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSRR 86
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.101e-11 Identity = 32/77 (41.56%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVR 441 + FV G++++T E L AFSQFG++ ++ II D+ RS+G+G+VTF E+ ++A+ MNG+ LDGR + V+ + Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: YOCE_SCHPO (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe GN=SPBC4F6.14 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.438e-11 Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1 Query: 208 SKLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPSRRYNTD 465 S LFV+ ++F T ++ L + FS G + A ++T+ ++GYG+VTFS E+AQ A E+ K L GR+L +D P +R D Sbjct: 5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVD 90
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.204e-11 Identity = 31/77 (40.26%), Postives = 53/77 (68.83%), Query Frame = 1 Query: 211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVR 441 + FV G++++T + L AFSQ+G+V ++ II D+ RS+G+G+VTF E+ ++A+ MNG+ LDGR + V+ + Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.185e-11 Identity = 34/99 (34.34%), Postives = 60/99 (60.61%), Query Frame = 1 Query: 211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDN-VRPS----RRYNTDVPLARQPPQ 492 KLF+ G++ T E+ L F ++G++ E ++ D+ N+S+G+ +VTF + +A++ +MNGK LDG+ + V+ +PS RR P +R PP+ Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 107
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.324e-11 Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 1 Query: 157 SNLKISAAQLVSYRGFTSKLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPSRRYNTDV 468 + L A L G +L+V + F+ TE+ML F FG++ ++ D RSKGYG++TFS E A+ AL ++NG L GR + V +V TD+ Sbjct: 246 NRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDI 349 The following BLAST results are available for this feature:
BLAST of CK937544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK937544 ID=CK937544; Name=CK937544; organism=Citrus sinensis; type=EST; length=639bpback to top |