CK937544

Overview
NameCK937544
Unique NameCK937544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.944e-12
Identity = 36/105 (34.29%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDN-VRPS----RRYNTDVPLARQPPQSAEDSR 510
            KLF+ G++  T E+ L   F ++G++ E  ++ D+  N+S+G+ +VTF +  +A++A  +MNGK LDG+ + V+   +PS    RR     P +R PP+     R
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGR 113          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.457e-12
Identity = 32/80 (40.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPSR 450
            + FV G+ ++T ++ L +AFS++G V ++ IITD+   RS+G+G+VTF+++E  + A+  MNG+ LDGR + V+  +  R
Sbjct:    7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSRR 86          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.101e-11
Identity = 32/77 (41.56%), Postives = 53/77 (68.83%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVR 441
            + FV G++++T E  L  AFSQFG++ ++ II D+   RS+G+G+VTF  E+  ++A+  MNG+ LDGR + V+  +
Sbjct:    9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: YOCE_SCHPO (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe GN=SPBC4F6.14 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.438e-11
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1
Query:  208 SKLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPSRRYNTD 465
            S LFV+ ++F T ++ L + FS  G +  A ++T+     ++GYG+VTFS  E+AQ A  E+  K L GR+L +D   P +R   D
Sbjct:    5 STLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVD 90          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.204e-11
Identity = 31/77 (40.26%), Postives = 53/77 (68.83%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVR 441
            + FV G++++T +  L  AFSQ+G+V ++ II D+   RS+G+G+VTF  E+  ++A+  MNG+ LDGR + V+  +
Sbjct:    9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.185e-11
Identity = 34/99 (34.34%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  211 KLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDN-VRPS----RRYNTDVPLARQPPQ 492
            KLF+ G++  T E+ L   F ++G++ E  ++ D+  N+S+G+ +VTF +  +A++   +MNGK LDG+ + V+   +PS    RR     P +R PP+
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPR 107          
BLAST of CK937544 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.324e-11
Identity = 37/104 (35.58%), Postives = 55/104 (52.88%), Query Frame = 1
Query:  157 SNLKISAAQLVSYRGFTSKLFVKGVSFSTTEEMLADAFSQFGQVTEATIITDKGKNRSKGYGYVTFSTEEEAQNALTEMNGKLLDGRVLFVDNVRPSRRYNTDV 468
            + L   A  L    G   +L+V  + F+ TE+ML   F  FG++    ++ D    RSKGYG++TFS  E A+ AL ++NG  L GR + V +V       TD+
Sbjct:  246 NRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDI 349          
The following BLAST results are available for this feature:
BLAST of CK937544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
HNRPG_HUMAN4.944e-1234.29Heterogeneous nuclear ribonucleoprotein G OS=Homo ... [more]
GRP_HORVU6.457e-1240.00Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP2_SINAL1.101e-1141.56Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
YOCE_SCHPO1.438e-1138.37Uncharacterized RNA-binding protein C4F6.14 OS=Sch... [more]
GRP1_SINAL3.204e-1140.26Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
HNRPG_RAT4.185e-1134.34Heterogeneous nuclear ribonucleoprotein G OS=Rattu... [more]
RBM23_HUMAN9.324e-1135.58Probable RNA-binding protein 23 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C11 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937544 ID=CK937544; Name=CK937544; organism=Citrus sinensis; type=EST; length=639bp
GGGGATTCAATTTTGATCACAAACATGGCATATAACTGAAGTACTAAATT
GGGCTTCTTCTGCTCACCTGTTGCGTTGTTATTTATTTACTCTCCCTTGC
AAAAATGGCGGCGCTAATACGAAAAAAACATTTTCAGAAATGGCGCAGTC
TCTCATTCAAACTTGAAAATTTCAGCAGCCCAACTCGTATCTTACAGAGG
ATTCACTTCTAAGCTTTTCGTCAAAGGCGTATCTTTCTCAACCACTGAAG
AGATGTTAGCTGATGCTTTTTCACAATTTGGCCAAGTCACTGAGGCAACA
ATAATAACAGATAAAGGTAAGAACAGATCAAAAGGTTATGGGTACGTGAC
TTTCAGCACAGAAGAGGAAGCCCAAAATGCCTTGACAGAGATGAATGGGA
AGTTACTAGATGGACGAGTCCTTTTTGTGGACAATGTAAGACCCAGCAGA
CGTTACAATACTGATGTGCCACTTGCGAGACAACCTCCCCAGTCAGCTGA
AGATAGCCGACATTAAATTGTTTTACATTTCATATGAATATATTGCGGTG
TCCTTAATGCTGGATACATGGGTGCTCAAATCATTTCATCTATAACAAAA
TATATTTTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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