CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP17A_BOVIN (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Bos taurus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 56/173 (32.37%), Postives = 83/173 (47.98%), Query Frame = -1
Query:   31 DLFVAGTDTTSSTLEWAMAELLRSPD---------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLG-SNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDE 465
            D+F AG +TT+S ++W +A LL  P                              L+A ++E LR+ P  P L+P KA+ D  I    + KG  V VN WA+   E  W++P  FMPERFL  +       +   +PFG+G R C G  LA + L L +  L+  F+ ++ D+
Sbjct:  298 DIFGAGVETTTSVIKWIVAYLLHHPSLKKRIQDDIDQIIGFNRTPTISDRNRLVLLEATIREVLRIRPVAPTLIPHKAVIDSSIGDLTIDKGTDVVVNLWALHHSEKEWQHPDLFMPERFLDPTGTQLISPSLSYLPFGAGPRSCVGEMLARQELFLFMSRLLQRFNLEIPDD 470          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP17A_BISBI (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Bison bison GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 56/173 (32.37%), Postives = 83/173 (47.98%), Query Frame = -1
Query:   31 DLFVAGTDTTSSTLEWAMAELLRSPD---------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLG-SNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDE 465
            D+F AG +TT+S ++W +A LL  P                              L+A ++E LR+ P  P L+P KA+ D  I    + KG  V VN WA+   E  W++P  FMPERFL  +       +   +PFG+G R C G  LA + L L +  L+  F+ ++ D+
Sbjct:  298 DIFGAGVETTTSVIKWIVAYLLHHPSLKKRIQDDIDQIIGFNRTPAISDRNRLVLLEATIREVLRIRPVAPTLIPHKAVIDSSIGDLTIDKGTDVVVNLWALHHSEKEWQHPDLFMPERFLDPTGTQLISPSLSYLPFGAGPRSCVGEMLARQELFLFMSRLLQRFNLEIPDD 470          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C79A1_SORBI (Tyrosine N-monooxygenase OS=Sorghum bicolor GN=CYP79A1 PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 54/171 (31.58%), Postives = 82/171 (47.95%), Query Frame = -1
Query:   46 QDLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW 468
            QD+  A  D  S+ +EWA+AE++ +P+                            Y++A ++E  RLHP  P  +P  ALAD  IAG+ VPKG+ V ++   +GR+   W+ PL F P+R L    S++     +   I F +GRR C    L   M  ++ G L+  F W
Sbjct:  346 QDITFAAVDNPSNAVEWALAEMVNNPEVMAKAMEELDRVVGRERLVQESDIPKLNYVKACIREAFRLHPVAPFNVPHVALADTTIAGYRVPKGSHVILSRTGLGRNPRVWDEPLRFYPDRHLATAASDVALTENDLRFISFSTGRRGCIAASLGTAMSVMLFGRLLQGFTW 516          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP17A_HORSE (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Equus caballus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 60/175 (34.29%), Postives = 85/175 (48.57%), Query Frame = -1
Query:   31 DLFVAGTDTTSSTLEWAMAELLRSPD---------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDE 465
            D+F AG +TT+S ++W +A LL  P                              L+A ++E LR+ P  P+L+P KAL D  I  F V  G  V +N WA+  +E  W  P  FMPERFL   GS L     ++  +PFG+G R C G  LA + L L    L+  F+ ++ D+
Sbjct:  298 DIFGAGVETTTSVVKWIVAFLLHDPQLKKKIQEEIDQNVGFSRTPTLSDRNRLLLLEATIREVLRIRPVAPMLIPHKALVDSSIGEFAVDDGTNVIINLWALHHNEKEWHQPDRFMPERFLDPTGSQLISPSLSY--LPFGAGPRSCIGELLARQELFLFTAWLLQRFNLEVPDD 470          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2U1_RAT (Cytochrome P450 2U1 OS=Rattus norvegicus GN=Cyp2u1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 63/188 (33.51%), Postives = 86/188 (45.74%), Query Frame = -1
Query:    1 FI*QDLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED--ENMDMEEKFGI 477
            +I  DLF+AGTDTT+++L W +  +  +P                             Y +A + E  RL   VPL +P        + G+ +PKG  V  N W+I RD + WE P  F P RFL        R    IPFG G+R+C G  LA   L LM  SL+ SF + L +  E   M  +FG+
Sbjct:  330 YIIGDLFIAGTDTTTNSLLWCLLYMSLNPGVQKKVHEEIERVIGRDRAPSLTDKAQMPYTEATIMEVQRLSMVVPLAIPHMTSEKTVLQGYSIPKGTVVLPNLWSIHRDPVIWEKPDDFCPHRFLDDQGQLLKRE-TFIPFGIGKRVCMGEQLAKMELFLMFVSLMQSFTFALPEGSEKPIMTGRFGL 516          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2U1_HUMAN (Cytochrome P450 2U1 OS=Homo sapiens GN=CYP2U1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 59/180 (32.78%), Postives = 87/180 (48.33%), Query Frame = -1
Query:   28 FI*QDLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFE---LIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDEN 477
            +I  DLF+AGTDTT+++L W +  +  +PD                            Y +A + E  RL   VPL +P     +  + G+ +PKG  +  N W++ RD   WE P  F P RF    LD +G+  +    IPFG G+R+C G  LA   L LM  SL+ SF + L +++
Sbjct:  344 YIIGDLFIAGTDTTTNSLLWCLLYMSLNPDVQEKVHEEIERVIGANRAPSLTDKAQMPYTEATIMEVQRLTVVVPLAIPHMTSENTVLQGYTIPKGTLILPNLWSVHRDPAIWEKPEDFYPNRF----LDDQGQLIKKETFIPFGIGKRVCMGEQLAKMELFLMFVSLMQSFAFALPEDS 519          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP17A_SQUAC (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Squalus acanthias GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.639e-20
Identity = 61/185 (32.97%), Postives = 88/185 (47.57%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFE-LIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED--ENMDMEEKFGI 465
            D+F AG +T+S+   W +  L+  P+                            +L A + E LR+ P  PLL+P  ALAD  I  + +PKG +V +N WAI  DE  W+NP +F P RFL  +  +   + E  +PFG+G R+C G  LA   L L    ++  F  ++       D E KFGI
Sbjct:  301 DIFGAGVETSSTAFAWMIIYLIHHPEVQKKIQEEIDSNIGFERTPKMSDKGNMNFLNATIHEILRIQPVSPLLIPHVALADSSIGDYTIPKGTRVIINLWAIHHDEKEWKNPDAFDPGRFLDEDGKYVCSSSESYLPFGAGTRVCLGEMLARMELFLFTSWILQRFTVQVPPGYPPPDKEGKFGI 485          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2DI_RAT (Cytochrome P450 2D18 OS=Rattus norvegicus GN=Cyp2d18 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.447e-20
Identity = 56/169 (33.14%), Postives = 83/169 (49.11%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            DLF+AG  TTS+TL WA+  ++  PD                            +  AV+ E  R    +PL +P K   D+E+ GF++PKG  + +N  ++ +DE  WE PL F PE FL +  +F  ++   +PF +GRR C G PLA   L L    L+  F + +
Sbjct:  304 DLFMAGMVTTSTTLTWALLFMILRPDVQCRVQQEIDEVIGQVRRPEMADQARMPFTNAVIHEVQRFADILPLGVPHKTSRDIEVQGFLIPKGTTLIINLSSVLKDETVWEKPLRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2U1_BOVIN (Cytochrome P450 2U1 OS=Bos taurus GN=CYP2U1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 62/190 (32.63%), Postives = 90/190 (47.37%), Query Frame = -1
Query:    1 FI*QDLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFE---LIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL-EDENMDMEEKFGI 477
            +I  DLF+AGTDTT+++L W +  +   P+                            Y +A + E  RL   VPL +P        + GF +PKG  +  N W++ RD   WE P  F P+RF    LD +G+  +    IPFG G+R+C G  LA   L LM  SL+ SF + L +D    +  K+G+
Sbjct:  344 YIIGDLFIAGTDTTTNSLLWCLLYMSLHPNIQEKIHEEIARVIGADRAPSLTDKAQMPYTEATIMEVQRLSTVVPLSIPHMTSEKTVLQGFTIPKGTIILPNLWSVHRDPAIWEKPNDFYPDRF----LDDQGQLIKKETFIPFGIGKRVCMGEQLAKMELFLMFVSLMQSFTFVLPKDSKPILTGKYGL 529          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2D4_RAT (Cytochrome P450 2D4 OS=Rattus norvegicus GN=Cyp2d4 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 56/169 (33.14%), Postives = 82/169 (48.52%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            DLF+AG  TTS+TL WA+  ++  PD                            +  AV+ E  R    +PL +P K   D+E+ GF++PKG  +  N  ++ +DE  WE PL F PE FL +  +F  ++   +PF +GRR C G PLA   L L    L+  F + +
Sbjct:  304 DLFMAGMVTTSTTLTWALLFMILHPDVQCRVQQEIDEVIGQVRRPEMADQARMPFTNAVIHEVQRFADILPLGVPHKTSRDIEVQGFLIPKGTTLITNLSSVLKDETVWEKPLRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP17A_BOVIN9.071e-2132.37Steroid 17-alpha-hydroxylase/17,20 lyase OS=Bos ta... [more]
CP17A_BISBI9.071e-2132.37Steroid 17-alpha-hydroxylase/17,20 lyase OS=Bison ... [more]
C79A1_SORBI9.071e-2131.58Tyrosine N-monooxygenase OS=Sorghum bicolor GN=CYP... [more]
CP17A_HORSE2.021e-2034.29Steroid 17-alpha-hydroxylase/17,20 lyase OS=Equus ... [more]
CP2U1_RAT2.639e-2033.51Cytochrome P450 2U1 OS=Rattus norvegicus GN=Cyp2u1... [more]
CP2U1_HUMAN2.639e-2032.78Cytochrome P450 2U1 OS=Homo sapiens GN=CYP2U1 PE=1... [more]
CP17A_SQUAC2.639e-2032.97Steroid 17-alpha-hydroxylase/17,20 lyase OS=Squalu... [more]
CP2DI_RAT3.447e-2033.14Cytochrome P450 2D18 OS=Rattus norvegicus GN=Cyp2d... [more]
CP2U1_BOVIN7.679e-2032.63Cytochrome P450 2U1 OS=Bos taurus GN=CYP2U1 PE=2 S... [more]
CP2D4_RAT7.679e-2033.14Cytochrome P450 2D4 OS=Rattus norvegicus GN=Cyp2d4... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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