CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP17A_CAVPO (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Cavia porcellus GN=CYP17A1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.679e-20
Identity = 57/174 (32.76%), Postives = 85/174 (48.85%), Query Frame = -1
Query:   34 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED 465
            D+F AG +T+SS + W +A LL +P                              L+A ++E LR+ P  P+L+P KA  D  I  F + K   V VN WA+  +E  W+ P  FMPERFL   GS +     ++  +PFG+G R C G  LA + + L+   L+  FD ++ +
Sbjct:  298 DIFGAGVETSSSVVLWVIAFLLHNPQVKKKIQEEIDHNVGFSRTPTFSDRNHLLMLEATIREVLRIRPVAPILIPHKANTDSSIGEFAIDKDTNVLVNLWALHHNEQEWDRPDQFMPERFLDPTGSQIIVPSSSY--LPFGAGPRSCVGEALARQEIFLITAWLLQKFDLEVPE 469          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2DS_MESAU (Cytochrome P450 2D28 OS=Mesocricetus auratus GN=CYP2D28A PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 57/169 (33.73%), Postives = 80/169 (47.34%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            DLF+AGT +TS+TL WA+  +++ PD                            Y  AV+ E  R     PL LP     D+E+ GF++PKG  +  N  ++ +DE  WE PL F PE FL +   F  +    +PF +GRR C G PLA   L L    L+  F + +
Sbjct:  304 DLFIAGTVSTSTTLSWALLFMIQYPDVQRRVQQEIDDILGPGRSPEMADQARMPYTNAVIHEVQRFADIAPLNLPCITSRDIEVQGFLIPKGTTLITNLSSVLKDETVWEKPLHFHPEHFLDAQGCFV-KQEAFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP21A_MOUSE (Steroid 21-hydroxylase OS=Mus musculus GN=Cyp21 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.310e-19
Identity = 58/165 (35.15%), Postives = 78/165 (47.27%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPD---------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            DLF+ GT+TT++TL WA+A LL  P+                             L A + E LRL P VPL LP +A     I+G+ +PK   +  N      DE+ WE P  F P+RFL       G+N     FG G R+C G PLA   L ++L  L+ +F
Sbjct:  282 DLFIGGTETTATTLSWAVAFLLHHPEIQKRLQEELDLKLGPGSQLLYRNRMQLPLLMATIAEVLRLRPVVPLALPHRATRASSISGYDIPKDMVIIPNIQGANLDEMVWELPSKFWPDRFLE-----PGKNPRTPSFGCGARVCLGEPLARLELFVVLARLLQAF 441          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2DA_RAT (Cytochrome P450 2D10 OS=Rattus norvegicus GN=Cyp2d10 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 56/169 (33.14%), Postives = 80/169 (47.34%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            DLF AG  TT++TL WA+  ++  PD                            Y  AV+ E  R     PL LPR    D+E+  F++PKG  + +N  ++ +DE  WE PL F PE FL +  +F  ++   +PF +GRR C G PLA   L L    L+  F + +
Sbjct:  304 DLFTAGMVTTATTLTWALLLMILYPDVQRRVQQEIDEVIGQVRCPEMTDQAHMPYTNAVIHEVQRFGDIAPLNLPRITSCDIEVQDFVIPKGTTLIINLSSVLKDETVWEKPLRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQHFSFSV 471          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2D3_RAT (Cytochrome P450 2D3 OS=Rattus norvegicus GN=Cyp2d3 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 57/169 (33.73%), Postives = 80/169 (47.34%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            DLF AG  TTS TL WA+  ++  PD                            +  AV+ E  R    VP+ LP K   D+E+ GF++PKG  +  N  ++ +DE  WE PL F PE FL +  +F  ++   +PF +GRR C G PLA   L L    L+  F + +
Sbjct:  304 DLFGAGMVTTSITLTWALLLMILHPDVQCRVQQEIDEVIGQVRHPEMADQAHMPFTNAVIHEVQRFADIVPMNLPHKTSRDIEVQGFLIPKGTTLIPNLSSVLKDETVWEKPLRFHPEHFLDAQGNFV-KHEAFMPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP21A_RAT (Steroid 21-hydroxylase OS=Rattus norvegicus GN=Cyp21 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 57/165 (34.55%), Postives = 79/165 (47.88%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPD---------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            DLFV GT+TT++TL WA+A LL  P+                             L A + E LRL P VP+ LP +A     I+G+ +PK   +  N      DE+ WE P  F P+RFL S     G++  +  FG G R+C G PLA     ++L  L+ +F
Sbjct:  285 DLFVGGTETTAATLSWAVAFLLHHPEIQKRLQEELDLKLAPSSQLLYKNRMQLPLLMATIAEVLRLRPVVPMALPHRATKASSISGYDIPKDTIIIPNIQGANLDEMVWELPSKFWPDRFLES-----GKSPRIPTFGCGARVCLGEPLARLEFFVVLARLLQTF 444          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C513F_DICDI (Probable cytochrome P450 513F1 OS=Dictyostelium discoideum GN=cyp513f1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 57/177 (32.20%), Postives = 88/177 (49.72%), Query Frame = -1
Query:   13 DLFVAGTDTTSSTLEWAMAELLRSPDA--------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDMEE 465
            +L +AGTD++++TL + +  L+ +P+                           Y  AV+KET RL+   PL  P     DVEI GF + KG Q+  N ++  R E  W+ PLSF+PERF+  N + K +N  ++ FG G R C G   A  M+ L +  LI ++ +     N  ++E
Sbjct:  308 NLLLAGTDSSANTLSFLLVSLINNPEIQEKVYNEIITNLKNDEISINDRFKCPYTCAVIKETHRLYSIAPLSEPHYCSNDVEIKGFKIAKGTQIIQNIYSSSRSEQYWDKPLSFIPERFI-DNANIKEKNKNIVSFGLGLRGCIGKSFAEYMIFLTVVRLIKNYKFSNPSPNQPLKE 483          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP17A_PIG (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Sus scrofa GN=CYP17A1 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 58/173 (33.53%), Postives = 82/173 (47.40%), Query Frame = -1
Query:   31 DLFVAGTDTTSSTLEWAMAELLRSP-------DAY--------------------LQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLG-SNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDE 465
            D+F AG +T++S ++W +A LL  P       DA                     L+A ++E LR  P  P L+P +A+ D  I  F + K   V VN WA+  +E  W  P  FMPERFL  +       +   +PFG+G R C G  LA + L L    L+  FD +L D+
Sbjct:  298 DIFGAGVETSASVVKWIVAFLLHYPLLRKKIQDAIDQNIGFNRAPSISDRNQLVLLEATIREVLRFRPVSPTLIPHRAIIDSSIGEFTIDKDTDVVVNLWALHHNEKEWHRPDLFMPERFLDPTGTQLISPSLSYLPFGAGPRSCVGEMLARQELFLFTAGLLQRFDLELPDD 470          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C77A2_SOLME (Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77A2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 61/177 (34.46%), Postives = 84/177 (47.46%), Query Frame = -1
Query:   10 GTDTTSSTLEWAMAELLRSPDA--------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERF-LG-SNLDFKG-RNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW-KLEDENMDMEEK 450
            GTDTT++ +EWA+  L+ +P+                           YL AVVKE LR HP   + L        ++ G+ +P G  V +    I  D   W  P  F P+RF LG  + D  G    ++IPFG GRRICPGL +A   + LML  L+  F+W   E+  +D  EK
Sbjct:  316 GTDTTATAIEWAIGRLIENPNIQSQLYEEIKKTVGENKIDEKDIEKMPYLNAVVKELLRKHPPTYMSLTHAVTEPAKLGGYDIPTGVNVEIFLPGISDDPNLWSEPEKFDPDRFYLGKEDADITGVSGVKMIPFGMGRRICPGLNMATVHVSLMLARLVQEFEWADPENTRVDFTEK 492          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C77A1_SOLME (Cytochrome P450 77A1 (Fragment) OS=Solanum melongena GN=CYP77A1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 59/178 (33.15%), Postives = 82/178 (46.07%), Query Frame = -1
Query:   10 GTDTTSSTLEWAMAELLRSPD--------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLG--SNLDFKG-RNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDEN--MDMEEK 450
            GTDTT++ LEW +  L+ +P                            YL AVVKE LR HP     L       V++AG+ +P    V      I  D   W +P  F P+RFL    + D  G +  +++PFG GRRICPGL +A   ++LML  ++  F+W     N  +D  EK
Sbjct:  303 GTDTTATALEWGIGRLMENPTIQNQLYQEIKTIVGDKKVDENDIEKMPYLNAVVKELLRKHPPTYFTLTHSVTEPVKLAGYDIPMDTNVEFFVHGISHDPNVWSDPEKFDPDRFLSGREDADITGVKEVKMMPFGVGRRICPGLGMATVHVNLMLARMVQEFEWFAYPGNNKVDFSEK 480          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP17A_CAVPO7.679e-2032.76Steroid 17-alpha-hydroxylase/17,20 lyase OS=Cavia ... [more]
CP2DS_MESAU1.310e-1933.73Cytochrome P450 2D28 OS=Mesocricetus auratus GN=CY... [more]
CP21A_MOUSE1.310e-1935.15Steroid 21-hydroxylase OS=Mus musculus GN=Cyp21 PE... [more]
CP2DA_RAT1.711e-1933.14Cytochrome P450 2D10 OS=Rattus norvegicus GN=Cyp2d... [more]
CP2D3_RAT2.234e-1933.73Cytochrome P450 2D3 OS=Rattus norvegicus GN=Cyp2d3... [more]
CP21A_RAT2.234e-1934.55Steroid 21-hydroxylase OS=Rattus norvegicus GN=Cyp... [more]
C513F_DICDI2.234e-1932.20Probable cytochrome P450 513F1 OS=Dictyostelium di... [more]
CP17A_PIG2.918e-1933.53Steroid 17-alpha-hydroxylase/17,20 lyase OS=Sus sc... [more]
C77A2_SOLME2.918e-1934.46Cytochrome P450 77A2 OS=Solanum melongena GN=CYP77... [more]
C77A1_SOLME2.918e-1933.15Cytochrome P450 77A1 (Fragment) OS=Solanum melonge... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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