CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2D6_PANPA (Cytochrome P450 2D6 OS=Pan paniscus GN=CYP2D6 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 56/169 (33.14%), Postives = 76/169 (44.97%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            DLF AG  TTS+TL W +  ++  PD                            Y  AV+ E  R    VPL +      D+E+ GF +PKG  +F N  ++ +DE  WE P  F PE FL +   F  +    +PF +GRR C G PLA   L L   SL+  F + +
Sbjct:  301 DLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGQVRRPEMGDQARMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEVQGFRIPKGTTLFTNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFV-KPEAFLPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSV 468          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP21A_BOVIN (Steroid 21-hydroxylase OS=Bos taurus GN=CYP21 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 58/168 (34.52%), Postives = 75/168 (44.64%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPDAY------------------------------LQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            DLF+ GT+TT+STL WA+A LL  P+                                L A + E LRL P VPL LP +      I G+ +P+G  V  N      DE  WE P  F P+RFL       G N   + FG G R+C G  LA   L ++L  L+ +F
Sbjct:  286 DLFIGGTETTASTLSWAVAFLLHHPEIQRRLQEELDRELGPGASCSRVTYKDRARLPLLNATIAEVLRLRPVVPLALPHRTTRPSSIFGYDIPEGMVVIPNLQGAHLDETVWEQPHEFRPDRFLE-----PGANPSALAFGCGARVCLGESLARLELFVVLLRLLQAF 448          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2DH_MACFA (Cytochrome P450 2D17 OS=Macaca fascicularis GN=CYP2D17 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 55/169 (32.54%), Postives = 76/169 (44.97%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            DLF AG  TTS+TL W +  ++  PD                            Y  AV+ E  R    VPL +      D+E+ GF++PKG  +F N  ++ +DE  WE P  F PE FL +   F  +    +PF +GRR C G PLA   L L    L+  F + +
Sbjct:  301 DLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGQVRRPEMGDQARMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIELQGFLIPKGTTLFTNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFV-KPEAFLPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 468          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2DJ_CALJA (Cytochrome P450 2D19 OS=Callithrix jacchus GN=CYP2D19 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 57/172 (33.14%), Postives = 77/172 (44.77%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFE---LIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            DLF AG  TTS TL W +  ++  PD                            Y  AV+ E  R    VPL +      D+E+ GF++PKG  +F N  ++ +DE  WE P  F PE F    LD +GR  +    +PF +GRR C G PLA   L L    L+  F + +
Sbjct:  301 DLFSAGMVTTSITLAWGLLLMILHPDVQRRVQQEIDDVIGRVRRPEMGDQTYMPYTTAVIHEVQRFADIVPLGVTHMTSRDIEVQGFLIPKGTTLFTNLSSVLKDEANWEKPFRFHPEHF----LDAQGRFVKPEAFLPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSV 468          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2DF_CANFA (Cytochrome P450 2D15 OS=Canis familiaris GN=CYP2D15 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 53/169 (31.36%), Postives = 78/169 (46.15%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            DLF+AG  +TS TL WA+  ++  PD                            +  AV+ E  R    VPL +P     D E+ GF++PKG  +  N  ++ +DE  W+ P  F PE FL +   F  ++   +PF +GRR+C G PLA   L L    L+  F + +
Sbjct:  304 DLFIAGMVSTSITLTWALLLMILHPDVQRRVQQEIDEVIGREQLPEMGDQTRMPFTVAVIHEVQRFGDIVPLGVPHMTSRDTEVQGFLIPKGTTLITNLSSVLKDEKVWKKPFRFYPEHFLDAQGHFV-KHEAFMPFSAGRRVCLGEPLARMELFLFFTCLLQRFSFSV 471          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_BALAC (Cytochrome P450 1A1 OS=Balaenoptera acutorostrata GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 55/184 (29.89%), Postives = 87/184 (47.28%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDF-KGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL-EDENMDMEEKFGI 465
            DLF AG DT ++ + W++  L+ SP                             YL+A + ET R    +P  +P     D  + GF +PKG  VFVN W I  D+  W++P +F PERFL ++    K  + ++I FG G+R C G  +A   + L L  L+   ++++     +DM   +G+
Sbjct:  317 DLFGAGFDTVTTAISWSLMYLVTSPSVQKKIQEELDTVIGSARQPRLSDRPRLPYLEAFILETFRHSSFLPFTIPHSTTRDTSLNGFYIPKGRCVFVNQWQINHDQKLWDDPSAFWPERFLTADGTINKALSEKVILFGLGKRKCIGETIARWEVFLFLAILLQQVEFRVTPGVKVDMTPVYGL 500          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2D6_PANTR (Cytochrome P450 2D6 OS=Pan troglodytes GN=CYP2D6 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 55/169 (32.54%), Postives = 76/169 (44.97%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            DLF AG  TTS+TL W +  ++  PD                            Y  AV+ E  R    VPL +      D+E+ GF +PKG  +F N  ++ +D+  WE P  F PE FL +   F  +    +PF +GRR C G PLA   L L   SL+  F + +
Sbjct:  301 DLFSAGIVTTSTTLAWGLLLMILHPDVQRRVQQEIDDVIGQVRRPEMGDQARMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEVQGFRIPKGTTLFTNLSSVLKDKAVWEKPFRFHPEHFLDAQGHFV-KPEAFLPFSAGRRACLGEPLARMELFLFFTSLLQHFSFSV 468          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_RAT (Cytochrome P450 1A1 OS=Rattus norvegicus GN=Cyp1a1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 57/185 (30.81%), Postives = 87/185 (47.03%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSN--LDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLE-DENMDMEEKFGI 465
            DLF AG DT ++ + W++  L+ +P                             YL+A + ET R    VP  +P   + D  + GF +PKG  VFVN W +  D+  W +P  F PERFL S+  LD K  + ++I FG G+R C G  +    + L L  L+   ++ +   E +DM   +G+
Sbjct:  317 DLFGAGFDTITTAISWSLMYLVTNPRIQRKIQEELDTVIGRDRQPRLSDRPQLPYLEAFILETFRHSSFVPFTIPHSTIRDTSLNGFYIPKGHCVFVNQWQVNHDQELWGDPNEFRPERFLTSSGTLD-KHLSEKVILFGLGKRKCIGETIGRLEVFLFLAILLQQMEFNVSPGEKVDMTPAYGL 500          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2J6_MOUSE (Cytochrome P450 2J6 OS=Mus musculus GN=Cyp2j6 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.731e-17
Identity = 57/165 (34.55%), Postives = 74/165 (44.85%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            DLF AGT+TTS+TL WA+  +   P+                            Y  AV+ E  R+   +PL +PR+   D  + GF +PKG  V  N  A+ RD   W  P  F PE FL  N  FK R    +PF  G+R C G  LA   L +   SL+  F
Sbjct:  306 DLFFAGTETTSTTLRWALLYMALYPEVQEKVQAEIDRVIGQKRAARLADRESMPYTNAVIHEVRRMGNIIPLNVPREVAMDTNLNGFHLPKGTMVLTNLTALHRDPKEWATPDVFNPEHFL-ENGQFKKRE-SFLPFSMGKRACLGEQLARSELFIFFTSLMQKF 468          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2D9_MOUSE (Cytochrome P450 2D9 OS=Mus musculus GN=Cyp2d9 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.731e-17
Identity = 57/172 (33.14%), Postives = 79/172 (45.93%), Query Frame = -1
Query:   34 QDLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED 468
            +DLF AG  TTS+TL WA+  ++  PD                            Y  AV+ E  R    VP+ LPR    D+E+  F++PKG  +  N  ++ +DE  WE PL F PE FL +   F  +    +PF +GRR C G  LA   L L    L+  F + + D
Sbjct:  303 RDLFGAGMLTTSTTLSWALMLMILHPDVQRRVQQEIDEVIGQVRHPEMADQAHMPYTNAVIHEVQRFGDIVPVNLPRITSHDIEVQDFLIPKGTILLPNMSSMLKDESVWEKPLRFHPEHFLDAQGHFV-KPEAFMPFSAGRRSCLGEALARMELFLFFTCLLQRFSFSVPD 473          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP2D6_PANPA7.187e-1833.14Cytochrome P450 2D6 OS=Pan paniscus GN=CYP2D6 PE=3... [more]
CP21A_BOVIN7.187e-1834.52Steroid 21-hydroxylase OS=Bos taurus GN=CYP21 PE=1... [more]
CP2DH_MACFA9.387e-1832.54Cytochrome P450 2D17 OS=Macaca fascicularis GN=CYP... [more]
CP2DJ_CALJA1.226e-1733.14Cytochrome P450 2D19 OS=Callithrix jacchus GN=CYP2... [more]
CP2DF_CANFA1.226e-1731.36Cytochrome P450 2D15 OS=Canis familiaris GN=CYP2D1... [more]
CP1A1_BALAC1.226e-1729.89Cytochrome P450 1A1 OS=Balaenoptera acutorostrata ... [more]
CP2D6_PANTR2.091e-1732.54Cytochrome P450 2D6 OS=Pan troglodytes GN=CYP2D6 P... [more]
CP1A1_RAT2.091e-1730.81Cytochrome P450 1A1 OS=Rattus norvegicus GN=Cyp1a1... [more]
CP2J6_MOUSE2.731e-1734.55Cytochrome P450 2J6 OS=Mus musculus GN=Cyp2j6 PE=2... [more]
CP2D9_MOUSE2.731e-1733.14Cytochrome P450 2D9 OS=Mus musculus GN=Cyp2d9 PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
back to top