CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2C9_HUMAN (Cytochrome P450 2C9 OS=Homo sapiens GN=CYP2C9 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.770e-16
Identity = 54/177 (30.51%), Postives = 85/177 (48.02%), Query Frame = -1
Query:   22 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK--LEDENMD 465
            DLF AGT+TTS+TL +A+  LL+ P+                            Y  AVV E  R    +P  LP     D++   +++PKG  + ++  ++  D   + NP  F P  FL    +FK   +  +PF +G+RIC G  LA   L L L S++ +F+ K  ++ +N+D
Sbjct:  293 DLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKY-FMPFSAGKRICVGEALAGMELFLFLTSILQNFNLKSLVDPKNLD 468          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CY250_MOUSE (Cytochrome P450 2C50 OS=Mus musculus GN=Cyp2c50 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.312e-16
Identity = 54/168 (32.14%), Postives = 79/168 (47.02%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AGT+TTS+TL +A+  LL+ P                             Y  A++ E  R    VP  LP +   D++   + +PKG  V  +  ++ RD   + NP  F P  FL  N  FK  ++  +PF +G+RIC G  LA   L L L S++ +F+ K
Sbjct:  293 DLFSAGTETTSTTLRYALLLLLKYPHVTAKVQEEIEHVIGKHRSPCMQDRSRMPYTDAMIHEVQRFIDLVPNSLPHEVTCDIKFRNYFIPKGTNVITSLSSVLRDSKEFPNPEKFDPGHFLDENGKFKKSDY-FMPFSTGKRICAGEGLARMELFLFLTSILQNFNLK 459          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_MACMU (Cytochrome P450 1A1 OS=Macaca mulatta GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.312e-16
Identity = 55/185 (29.73%), Postives = 86/185 (46.49%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSN--LDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL-EDENMDMEEKFGI 465
            DLF AG DT ++ + W++  L+ +P                             Y++A + ET R    VP  +P     D  + GF +PKG  VFVN W I  D+  W NP  F+PERF+  +  +D K  + ++I FG G+R C G  +A   + L L  L+   ++ +     +DM   +G+
Sbjct:  313 DLFGAGFDTVTTAISWSLMYLVTNPRVQRKIQEELDTVIGRSRRPRLSDRSHLPYMEAFILETFRHSSFVPFTIPHSTTRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFITPDGAID-KVLSEKVILFGLGKRKCIGETIARWEVFLFLAILLQRVEFSVPPGVKVDMTPIYGL 496          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_MACFA (Cytochrome P450 1A1 OS=Macaca fascicularis GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.312e-16
Identity = 55/185 (29.73%), Postives = 86/185 (46.49%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSN--LDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL-EDENMDMEEKFGI 465
            DLF AG DT ++ + W++  L+ +P                             Y++A + ET R    VP  +P     D  + GF +PKG  VFVN W I  D+  W NP  F+PERF+  +  +D K  + ++I FG G+R C G  +A   + L L  L+   ++ +     +DM   +G+
Sbjct:  313 DLFGAGFDTVTTAISWSLMYLVTNPRVQRKIQEELDTVIGRSRRPRLSDRSHLPYMEAFILETFRHSSFVPFTIPHSTTRDTSLKGFYIPKGRCVFVNQWQINHDQKLWVNPSEFLPERFITPDGAID-KVLSEKVILFGLGKRKCIGETIARWEVFLFLAILLQRVEFSVPPGVKVDMTPIYGL 496          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C508D_DICDI (Probable cytochrome P450 508D1 OS=Dictyostelium discoideum GN=cyp508d1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.312e-16
Identity = 52/172 (30.23%), Postives = 81/172 (47.09%), Query Frame = -1
Query:   28 DLFVAGTDTTSSTLEWAMAELL--------------------------RSPDAYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDEN 465
            D+ +AG DT +S+LEW +  L                           R    Y  A +KET+RL    P  LP     D+ + G  +PK + V +N +++GR+   + +PL F P RF+GS  D        +PFG+G R C G  L +  ++L+L ++  +F  K+  EN
Sbjct:  292 DVILAGVDTLASSLEWFLVMLCNNQQIQDTVYNELKETVVGPVVTLNDRPSTPYTMACIKETIRLKAPAPFGLPHTTDQDIIVKGHFIPKDSMVLINFYSLGRNPKDFPDPLKFDPNRFIGSTPD------SFMPFGTGPRNCIGQALGMDQIYLLLSNIFLNF--KITSEN 455          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3A4_HUMAN (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 3.020e-16
Identity = 58/164 (35.37%), Postives = 76/164 (46.34%), Query Frame = -1
Query:   43 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 453
            AG +TTSS L + M EL   PD                            YL  VV ETLRL P + + L R    DVEI G  +PKG  V + ++A+ RD   W  P  F+PERF   N D     +   PFGSG R C G+  A+  + L L  ++ +F +K
Sbjct:  305 AGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFP-IAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKD-NIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFK 466          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_LIMLI (Cytochrome P450 1A1 OS=Limanda limanda GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.020e-16
Identity = 55/186 (29.57%), Postives = 87/186 (46.77%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW-KLEDENMDMEEKFGI 465
            DLF AG DT S+ L W++  L+  P+                            +L+A + E LR    +P  +P     D  + G+ +PK   VF+N W I  D   W++P SF P+RFL   GS ++ K    +++ FG G+R C G  +A   ++L L  LI    +  +  E +DM  ++G+
Sbjct:  318 DLFGAGFDTVSTALSWSVMYLVAHPEIQERLYQEIEDKVGLDRMPLLSDKPNLPFLEAFILEILRHSSFLPFTIPHCTTKDTSLNGYFIPKDTCVFINQWQINHDPEMWKDPSSFNPDRFLSADGSEVN-KLDGEKVMAFGMGKRRCIGEVIARNEVYLFLAILIQKLHFLPIPGEKLDMTPEYGL 502          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_CHACA (Cytochrome P450 1A1 OS=Chaetodon capistratus GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.020e-16
Identity = 55/185 (29.73%), Postives = 85/185 (45.95%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLD--FKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW-KLEDENMDMEEKFGI 465
            DLF AG DT S+ L W++  L+  PD                            YL+A + E  R    +P  +P  +  D  + G+ +PK   VF+N W I RD   W++P SF P+RFL  N     K    +++ FG G+R C G  +A   ++  L  LI    + ++  E +DM  ++G+
Sbjct:  318 DLFGAGFDTVSTALSWSVMYLVAYPDIQERLFQEIKDNVGLDRTPLLSDRSKVPYLEAFILELFRHSSFLPFTIPHCSAKDTSLNGYFIPKDTCVFINQWQINRDPELWKDPSSFNPDRFLSCNGTEVNKQEGEKVMVFGMGKRRCIGEVIARNEVYRGLAILIQRLQFHEMPGELLDMTPEYGL 502          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C5131_DICDI (Probable cytochrome P450 513A1 OS=Dictyostelium discoideum GN=cyp513a1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.944e-16
Identity = 51/130 (39.23%), Postives = 70/130 (53.85%), Query Frame = -1
Query:    1 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDMEE--KFGI 384
            YL  VVKET R +P+  + LP     DVE+ G+ +  G Q+  N WA  R+E  +  P SF+PERF+      +  N  LI FG G R C G  LA   +  ML SLIN +++   + +  + E  KFGI
Sbjct:  368 YLSMVVKETFRKYPSGTIGLPHVTSEDVELNGYKICAGTQIIQNIWATHRNEKQFSEPDSFIPERFISQQ---QSANSNLIHFGCGVRDCIGKSLADSEIFTMLASLINRYEFTNPNPSTPLNEIGKFGI 494          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2C8_HUMAN (Cytochrome P450 2C8 OS=Homo sapiens GN=CYP2C8 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 53/172 (30.81%), Postives = 81/172 (47.09%), Query Frame = -1
Query:   31 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDE 465
            DLFVAGT+TTS+TL + +  LL+ P+                            Y  AVV E  R    VP  +P     D +   +++PKG  +     ++  D+  + NP  F P  FL  N +FK  ++  +PF +G+RIC G  LA   L L L +++ +F+ K  D+
Sbjct:  293 DLFVAGTETTSTTLRYGLLLLLKHPEVTAKVQEEIDHVIGRHRSPCMQDRSHMPYTDAVVHEIQRYSDLVPTGVPHAVTTDTKFRNYLIPKGTTIMALLTSVLHDDKEFPNPNIFDPGHFLDKNGNFKKSDY-FMPFSAGKRICAGEGLARMELFLFLTTILQNFNLKSVDD 463          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP2C9_HUMAN1.770e-1630.51Cytochrome P450 2C9 OS=Homo sapiens GN=CYP2C9 PE=1... [more]
CY250_MOUSE2.312e-1632.14Cytochrome P450 2C50 OS=Mus musculus GN=Cyp2c50 PE... [more]
CP1A1_MACMU2.312e-1629.73Cytochrome P450 1A1 OS=Macaca mulatta GN=CYP1A1 PE... [more]
CP1A1_MACFA2.312e-1629.73Cytochrome P450 1A1 OS=Macaca fascicularis GN=CYP1... [more]
C508D_DICDI2.312e-1630.23Probable cytochrome P450 508D1 OS=Dictyostelium di... [more]
CP3A4_HUMAN3.020e-1635.37Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
CP1A1_LIMLI3.020e-1629.57Cytochrome P450 1A1 OS=Limanda limanda GN=cyp1a1 P... [more]
CP1A1_CHACA3.020e-1629.73Cytochrome P450 1A1 OS=Chaetodon capistratus GN=cy... [more]
C5131_DICDI3.944e-1639.23Probable cytochrome P450 513A1 OS=Dictyostelium di... [more]
CP2C8_HUMAN5.151e-1630.81Cytochrome P450 2C8 OS=Homo sapiens GN=CYP2C8 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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