CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_PLEPL (Cytochrome P450 1A1 OS=Pleuronectes platessa GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 54/186 (29.03%), Postives = 87/186 (46.77%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW-KLEDENMDMEEKFGI 465
            DLF AG DT S+ L W++  L+  P+                            +L+A + E LR    +P  +P     D  + G+ +PK   VF+N W I  D   W++P SF P+RFL   GS ++ K    +++ FG G+R C G  +A   ++L L  +I    +  +  E +DM  ++G+
Sbjct:  318 DLFGAGFDTVSTALSWSVMYLVAHPEIQERLYQEIEDKVGLDRMPLLSDKPNLPFLEAFILEILRHSSFLPFTIPHCTTKDTSLNGYFIPKDTCVFINQWQINHDPELWKDPSSFNPDRFLSADGSEVN-KLDGEKVMAFGMGKRRCIGEVIARNEVYLFLAIIIQKLHFLPIPGEKLDMTPEYGL 502          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_PLAFE (Cytochrome P450 1A1 OS=Platichthys flesus GN=cyp1a1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 54/186 (29.03%), Postives = 87/186 (46.77%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW-KLEDENMDMEEKFGI 465
            DLF AG DT S+ L W++  L+  P+                            +L+A + E LR    +P  +P     D  + G+ +PK   VF+N W I  D   W++P SF P+RFL   GS ++ K    +++ FG G+R C G  +A   ++L L  +I    +  +  E +DM  ++G+
Sbjct:  318 DLFGAGFDTVSTALSWSVMYLVAHPEIQERLYQEIEDKVGLDRMPLLSDKPNLPFLEAFILEILRHSSFLPFTIPHCTTKDTSLNGYFIPKDTCVFINQWQINHDPELWKDPSSFNPDRFLSADGSEVN-KLDGEKVMAFGMGKRRCIGEVIARNEVYLFLAIIIQKLHFLPIPGEKLDMTPEYGL 502          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C554A_DICDI (Probable cytochrome P450 554A1 OS=Dictyostelium discoideum GN=cyp554a1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 48/165 (29.09%), Postives = 82/165 (49.70%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPD-------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAG--FIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            D  +AGTDTT ST+EW + +L+ +P+                          +L + +KET RL+P  PL LPRK++ ++ I    + +P    + ++      DE  +++P  F P+RFL S +       + + FG G R C G  +A+  +H+ L +LI ++
Sbjct:  311 DFLMAGTDTTGSTIEWIILKLVNNPEFQELIFQELKKLNKSEITANDKINTPFLNSFIKETNRLYPIAPLSLPRKSINEMIIGDNKYYIPANTNILMDVKGFSLDENNYKDPNEFKPDRFLNSKVS------DTLNFGIGPRNCIGQTIAMNQIHIFLSNLILNY 469          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3AC_CANFA (Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A12 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.727e-16
Identity = 56/164 (34.15%), Postives = 77/164 (46.95%), Query Frame = -1
Query:   43 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 453
            AG +TTS++L + M EL   PD                            YL  V+ ETLRL+P +   L R    DVEI+G  +PKG  V V  + + RD+  W  P  F PERF   N D     +  +PFG+G R C G+  AI  + L L  ++ +F +K
Sbjct:  305 AGYETTSTSLSFLMYELATHPDVQQKLQEEIDATFPNKALPTYDALVQMEYLDMVLNETLRLYP-IAGRLERVCKKDVEISGVFIPKGTVVMVPTFTLHRDQSLWPEPEEFRPERFSRKNKD-SINPYTYLPFGTGPRNCIGMRFAIMNMKLALVRVLQNFSFK 466          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CT_MOUSE (Cytochrome P450 2C29 OS=Mus musculus GN=Cyp2c29 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.727e-16
Identity = 52/168 (30.95%), Postives = 81/168 (48.21%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AGT+TTS+TL +A+  LL+ PD                            Y  A++ E  R    +P  LP     D++   +++PKG  V  +  ++  D   + NP  F P  FL +N +FK  ++  +PF +G+RIC G  LA   L L+L +++ +F  K
Sbjct:  293 DLFGAGTETTSTTLRYALLLLLKYPDVTAKVQEEIDRVVGRHRSPCMQDRSHMPYTDAMIHEVQRFIDLLPTSLPHAVTCDIKFRKYLIPKGTTVITSLSSVLHDSKEFPNPEMFDPGHFLNANGNFKKSDY-FMPFSTGKRICAGEGLARMELFLILTTILQNFKLK 459          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C5083_DICDI (Probable cytochrome P450 508A3 OS=Dictyostelium discoideum GN=cyp508a3-1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.727e-16
Identity = 52/183 (28.42%), Postives = 88/183 (48.09%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW-KLEDENMDMEEKFGI 465
            DLF+AGTDT+S++LE+ +  L+  P+                            Y  + +KETLR  P   + +PR    D+ I    +PK AQ+F+N + + R++  +ENP  F P RF+  +      N   +PF  G R C G   A+  + L   ++I +F +  ++ + +D  E +G+
Sbjct:  286 DLFLAGTDTSSASLEYMVMMLVNYPEIQEKVYDEIKLTVNGRNKVLLSDRQFTPYTVSFIKETLRYKPPSSVGVPRTTSQDIIIGDKFIPKDAQIFINYYGLSRNQDYFENPEQFEPSRFMNPD-----TNIAFLPFSIGTRNCVGQNFALDEMFLAFSNIILNFKFSSIDGKQIDETELYGV 463          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP237_MOUSE (Cytochrome P450 2C37 OS=Mus musculus GN=Cyp2c37 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.786e-16
Identity = 53/168 (31.55%), Postives = 78/168 (46.43%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AGT+TTS+TL +A+  LL+ P                             Y  A++ E  R    +P  LP +   D++   + +PKG  V  +  ++  D   + NP  F P  FL  N  FK  ++  +PF +G+RIC G  LA   L L L S++ SF+ K
Sbjct:  293 DLFSAGTETTSTTLRYALLLLLKYPHVTAKVQKEIEHVIGKHRSPCMQDRSRMPYTDAMIHEVQRFIDLIPNSLPHEVTCDIKFRNYFIPKGTTVITSLSSVLHDSTEFPNPEVFDPGHFLDGNGKFKKSDY-FMPFSTGKRICAGEGLARMELFLFLTSILQSFNLK 459          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_MESAU (Cytochrome P450 1A1 OS=Mesocricetus auratus GN=CYP1A1 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.786e-16
Identity = 55/185 (29.73%), Postives = 85/185 (45.95%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSN--LDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLE-DENMDMEEKFGI 465
            DLF AG DT ++ + W++  L+ +P                             YL+A + ET R    +P  +P     D  + GF +PKG  VFVN W I  ++  W +P  F PERFL S+  LD K  + ++  FG G+R C G  +    + L L  L+   ++ +   E +DM   +G+
Sbjct:  317 DLFGAGFDTVTTAISWSLMYLVTNPGVQRKIQEELDTVIGRSRRPRLCDRSQLPYLEAFILETFRHSSFLPFTIPHSTTRDTSLCGFYIPKGHCVFVNQWQINHNQELWGDPNKFRPERFLTSSGTLD-KVLSGKVTLFGLGKRKCIGETIGRLEVFLFLAILLQQIEFTVSPGEKVDMTPIYGL 500          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_FELCA (Cytochrome P450 1A1 OS=Felis catus GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.786e-16
Identity = 53/184 (28.80%), Postives = 83/184 (45.11%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDF-KGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL-EDENMDMEEKFGI 465
            DLF AG DT ++ + W +  L+ SP+                            Y++A + E  R    VP  +P     D  ++GF +PK   VFVN W I  D+  W +P  F PERFL  +    K  + ++I FG G+R C G  +A   + L L  L+   ++ + +   +DM   +G+
Sbjct:  318 DLFGAGFDTVTTAISWCLMYLVTSPNVQEKIQKELDTVIGRERQPRLSDRLQLPYMEAFILEMFRHTSFVPFTIPHSTTKDTSLSGFYIPKERCVFVNQWQINHDQKLWGDPSEFRPERFLTPDGTINKALSEKVILFGLGKRKCIGETIARLEVFLFLAILLQQVEFSVPQGTKVDMTPIYGL 501          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2H2_CHICK (Cytochrome P450 2H2 OS=Gallus gallus GN=CYP2H2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.499e-15
Identity = 54/177 (30.51%), Postives = 83/177 (46.89%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            DLF+AGT TTS+TL + +  LL+ P+                            Y  AV+ E  R    +P+ LPR  + D ++  + +PK   +F     I +D   + NP  F P  FL +N  F+  N+  +PF +G+RIC G  LA   L L L S++ +F  K   +  D++
Sbjct:  294 DLFLAGTGTTSTTLRYGLLILLKHPEIEEKMHKEIDRVVGRDRSPCMADRSQLPYTDAVIHEIQRFIDFLPVNLPRAVIKDTKLRDYFIPKDTMIFPLLSPILQDCKEFPNPEKFDPGHFLNANGTFRKSNY-FMPFSAGKRICAGEGLARMELFLFLTSILQNFSLKPVKDRKDID 469          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP1A1_PLEPL5.151e-1629.03Cytochrome P450 1A1 OS=Pleuronectes platessa GN=cy... [more]
CP1A1_PLAFE5.151e-1629.03Cytochrome P450 1A1 OS=Platichthys flesus GN=cyp1a... [more]
C554A_DICDI5.151e-1629.09Probable cytochrome P450 554A1 OS=Dictyostelium di... [more]
CP3AC_CANFA6.727e-1634.15Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A1... [more]
CP2CT_MOUSE6.727e-1630.95Cytochrome P450 2C29 OS=Mus musculus GN=Cyp2c29 PE... [more]
C5083_DICDI6.727e-1628.42Probable cytochrome P450 508A3 OS=Dictyostelium di... [more]
CP237_MOUSE8.786e-1631.55Cytochrome P450 2C37 OS=Mus musculus GN=Cyp2c37 PE... [more]
CP1A1_MESAU8.786e-1629.73Cytochrome P450 1A1 OS=Mesocricetus auratus GN=CYP... [more]
CP1A1_FELCA8.786e-1628.80Cytochrome P450 1A1 OS=Felis catus GN=CYP1A1 PE=2 ... [more]
CP2H2_CHICK1.499e-1530.51Cytochrome P450 2H2 OS=Gallus gallus GN=CYP2H2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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