CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2E1_RABIT (Cytochrome P450 2E1 OS=Oryctolagus cuniculus GN=CYP2E1 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.499e-15
Identity = 54/178 (30.34%), Postives = 86/178 (48.31%), Query Frame = -1
Query:   19 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK--LEDENMDM 465
            D+F AGT+TTS+TL + +  LL+ P+                            Y+ AVV E  R    VP  LP +A  D    G+++PKG  V     ++  D+  + +P  F PE FL     FK  ++   PF +G+R+C G  LA   L L+L +++  F+ K  ++ E++D+
Sbjct:  295 DMFFAGTETTSTTLRYGLLILLKHPEIEEKLHEEIDRVIGPSRMPSVRDRVQMPYMDAVVHEIQRFIDLVPSNLPHEATRDTTFQGYVIPKGTVVIPTLDSLLYDKQEFPDPEKFKPEHFLNEEGKFKYSDY-FKPFSAGKRVCVGEGLARMELFLLLSAILQHFNLKPLVDPEDIDL 471          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CG_RABIT (Cytochrome P450 2C16 OS=Oryctolagus cuniculus GN=CYP2C16 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.499e-15
Identity = 53/177 (29.94%), Postives = 83/177 (46.89%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            DLF AGT+TTS+TL +++  LL+ P+                            Y  AV+ E  R    VP  LP     D++   + +PKG  +  +  ++  DE  + NP  F P  FL  + +FK  ++  +PF +G+RIC G  LA   L L L S++ +F  +   E  D++
Sbjct:  290 DLFGAGTETTSTTLRYSLLLLLKHPEVADKVQEEIERVIGRHRSPCMQDRSRMPYTDAVIHEIQRFIDLVPNNLPHTVTRDIKFRNYFIPKGTDIMTSLTSVLHDEKAFPNPKVFDPGHFLDESGNFKKSDY-FMPFSAGKRICVGEALARMELFLFLTSILQNFKLQSLVEPKDLD 465          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_RABIT (Cytochrome P450 1A1 OS=Oryctolagus cuniculus GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.499e-15
Identity = 55/184 (29.89%), Postives = 83/184 (45.11%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSP----------DA-----------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL-GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLE-DENMDMEEKFGI 465
            DLF AG DT ++ + W++  L+  P          DA                 YL+AV+ ET R    +P  +P     D  + GF +PKG  VFVN W    D   W +P +F PERFL  S    K    +++ FG G+R C G  +    + L L +L+   ++ +     +DM   +G+
Sbjct:  317 DLFGAGFDTVTTAISWSLMYLVTKPRIQRKIQEELDAVVGRARRPRFSDRPQLPYLEAVIMETFRHTSFLPFTIPHSTTRDTSLGGFYIPKGRCVFVNQWQNNHDPELWGDPEAFRPERFLTPSGAVDKALTEKVLLFGLGKRKCIGETIGRLEVFLFLATLLQQVEFSVSPGTTVDMTPIYGL 500          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3AL_CALJA (Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3A21 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.957e-15
Identity = 57/164 (34.76%), Postives = 77/164 (46.95%), Query Frame = -1
Query:   43 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 453
            AG +TTSSTL + M EL   PD                            YL  VV ETLRL P + + L R    DVEI G  +PKG  V + ++A+  D   W  P  F+PERF  +N D     +   PFG+G R C G+  A+  + L L  ++ +F +K
Sbjct:  305 AGYETTSSTLSFIMYELATHPDVQQKLQEEIDAVLPNKAPATYDTVLQMEYLDMVVNETLRLFP-LAMRLERVCKKDVEINGVFIPKGVVVMIPSYALHYDPKYWTEPEKFLPERFSKNNKD-NIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSFK 466          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2R1_MOUSE (Vitamin D 25-hydroxylase OS=Mus musculus GN=Cyp2r1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.957e-15
Identity = 54/165 (32.73%), Postives = 76/165 (46.06%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            +L +AGT+TT++ L WA+  +   P+                            Y +AV+ E LR    VPL +      D  + G+ +PKG  V  N +++  DE  W++P  F PERFL SN  F  +   LIPF  GRR C G  LA   + L   SL+  F
Sbjct:  306 ELIIAGTETTTNVLRWAILFMALYPNIQGQVHKEIDLIVGHNRRPSWEYKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFDEKYWKDPDMFYPERFLDSNGYFTKKE-ALIPFSLGRRHCLGEQLARMEMFLFFTSLLQQF 469          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2J1_RABIT (Cytochrome P450 2J1 OS=Oryctolagus cuniculus GN=CYP2J1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.957e-15
Identity = 58/183 (31.69%), Postives = 83/183 (45.36%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK-LEDENMDMEEKFGI 465
            DLF+AGT+TTS  + W +  +   P+                            Y  AV+ E  R+   +PL +PR+   D  +AG+ +PKG  V  N  A+ +D   W  P +F PE FL  N  FK +    IPF  G+R C G  LA   L +   SL+  F +K   DE + +  + GI
Sbjct:  307 DLFLAGTETTSD-MRWGLLFMALYPEIQEKVHAEIDSVIGQWQQPSMASRESLPYTNAVIHEVQRMGNILPLNVPREVTVDTTLAGYHLPKGTVVLTNLTALHKDPEEWATPDTFNPEHFL-ENGQFKKKE-AFIPFSIGKRACLGEQLAKSELFIFFTSLMQKFTFKPPSDEKLTLNFRMGI 486          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CK_MACFA (Cytochrome P450 2C20 OS=Macaca fascicularis GN=CYP2C20 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.957e-15
Identity = 51/168 (30.36%), Postives = 80/168 (47.62%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLFVAGT+TTS+TL + +  LL+ P+                            Y  AV+ E  R    VP  +P     D++   +++PKG  +     ++  D+  + NP  F P  FL  N +FK  ++  +PF +G+RIC G  LA   L L L +++ +F+ K
Sbjct:  293 DLFVAGTETTSTTLRYGLLLLLKHPEVTAKVQEEIDHVIGRHRSPCMQDRSHMPYTDAVIHEIQRYIDLVPTGVPHAVTTDIKFRNYLIPKGTIIITLLTSVLHDDKEFPNPKIFDPGHFLDENGNFKKSDY-FMPFSAGKRICAGEGLARMELFLFLTTILQNFNLK 459          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CJ_HUMAN (Cytochrome P450 2C19 OS=Homo sapiens GN=CYP2C19 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.957e-15
Identity = 53/177 (29.94%), Postives = 81/177 (45.76%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            DL  AGT+TTS+TL +A+  LL+ P+                            Y  AVV E  R    +P  LP     DV+   +++PKG  +  +  ++  D   + NP  F P  FL    +FK  N+  +PF +G+RIC G  LA   L L L  ++ +F+ K   +  D++
Sbjct:  293 DLLGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVVGRNRSPCMQDRGHMPYTDAVVHEVQRYIDLIPTSLPHAVTCDVKFRNYLIPKGTTILTSLTSVLHDNKEFPNPEMFDPRHFLDEGGNFKKSNY-FMPFSAGKRICVGEGLARMELFLFLTFILQNFNLKSLIDPKDLD 468          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2C3_RABIT (Cytochrome P450 2C3 OS=Oryctolagus cuniculus GN=CYP2C3 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.957e-15
Identity = 52/168 (30.95%), Postives = 81/168 (48.21%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            D+F AGTDTTS+TL++A+  LL+ P+                            Y  AV+ E  R    VP  LP     D+E  G+++PKG  +  +  ++  D+  + NP  F P  FL  + +FK  ++  +PF +G+R C G  LA   L L+L +++  F  K
Sbjct:  292 DVFSAGTDTTSNTLKFALLLLLKHPEITAKVQEEIEHVIGRHRSPCMQDRTRMPYTDAVMHEIQRYVDLVPTSLPHAVTQDIEFNGYLIPKGTDIIPSLTSVLYDDKEFPNPEKFDPGHFLDESGNFKKSDY-FMPFSAGKRACVGEGLARMELFLLLTTILQHFTLK 458          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP239_MOUSE (Cytochrome P450 2C39 OS=Mus musculus GN=Cyp2c39 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.957e-15
Identity = 52/178 (29.21%), Postives = 87/178 (48.88%), Query Frame = -1
Query:   19 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK--LEDENMDM 465
            +LF AGT+TTS+TL +A+  L++ PD                            Y  A++ E  R    VP  +PR    D++   +++PKG  V  +  ++  D   + NP  F P  FL +N +FK ++   +PF +G+R+C G  LA   L L L +++ +F  K  +  +++DM
Sbjct:  293 NLFAAGTETTSTTLRYALLLLMKYPDVTAKVQEEIDHVIGRHRSPCMQDRNHMPYTDAMIHEVQRFINLVPNNIPRAVTCDIKFRNYLIPKGTTVVTSLTSVLHDSKEFPNPELFDPGHFLDANGNFK-KSDHFMPFSAGKRVCAGEGLARMELFLFLTTILQNFKLKPLVHPKDIDM 469          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP2E1_RABIT1.499e-1530.34Cytochrome P450 2E1 OS=Oryctolagus cuniculus GN=CY... [more]
CP2CG_RABIT1.499e-1529.94Cytochrome P450 2C16 OS=Oryctolagus cuniculus GN=C... [more]
CP1A1_RABIT1.499e-1529.89Cytochrome P450 1A1 OS=Oryctolagus cuniculus GN=CY... [more]
CP3AL_CALJA1.957e-1534.76Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3... [more]
CP2R1_MOUSE1.957e-1532.73Vitamin D 25-hydroxylase OS=Mus musculus GN=Cyp2r1... [more]
CP2J1_RABIT1.957e-1531.69Cytochrome P450 2J1 OS=Oryctolagus cuniculus GN=CY... [more]
CP2CK_MACFA1.957e-1530.36Cytochrome P450 2C20 OS=Macaca fascicularis GN=CYP... [more]
CP2CJ_HUMAN1.957e-1529.94Cytochrome P450 2C19 OS=Homo sapiens GN=CYP2C19 PE... [more]
CP2C3_RABIT1.957e-1530.95Cytochrome P450 2C3 OS=Oryctolagus cuniculus GN=CY... [more]
CP239_MOUSE1.957e-1529.21Cytochrome P450 2C39 OS=Mus musculus GN=Cyp2c39 PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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