CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP27A_MOUSE (Sterol 26-hydroxylase, mitochondrial OS=Mus musculus GN=Cyp27a1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 56/169 (33.14%), Postives = 78/169 (46.15%), Query Frame = -1
Query:   49 DLFVAGTDTTSSTLEWAMAELLRSPDAY---------------------------LQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL-GSNLDFKG--RNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFD 465
            +L +AG DTTS+TL WA+  L +SP+                             L+AV+KETLRL+P VP         + EI GF+ PK  Q  +  + + RD   +  P SF P R+L     D  G    F  +PFG G R C G  +A   + LML  L+  ++
Sbjct:  333 ELLLAGVDTTSNTLTWALYHLSKSPEIQEALHKEVTGVVPFGKVPQHKDFAHMPLLKAVIKETLRLYPVVPTNSRIITEKETEINGFLFPKNTQFVLCHYVVSRDPSVFPEPNSFQPHRWLRKKEADNPGILHPFGSVPFGYGVRSCLGRRIAELEMQLMLSRLVQKYE 501          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_STECH (Cytochrome P450 1A1 OS=Stenotomus chrysops GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 53/186 (28.49%), Postives = 87/186 (46.77%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW-KLEDENMDMEEKFGI 465
            DLF AG DT S+ L W++  L+  P+                            +L+A + ET R    +P  +P     D  + G+ +PK   VF+N W I  D   W++P SF P+RFL   G+ ++ K    +++ FG G+R C G  +A   + L L  L+ +  +  +  E +DM  ++G+
Sbjct:  318 DLFGAGFDTISTALSWSVMYLVAYPEIQERLYQEMNETVGPDRTPCLSDKPKLPFLEAFILETFRHSSFLPFTIPHCTSKDTSLNGYFIPKDTCVFINQWQINHDAELWKDPSSFNPDRFLNADGTEVN-KLEGEKMMVFGMGKRRCIGEVIARSEVFLFLAILVQNLRFHSMPGEPLDMTPEYGL 502          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_DICLA (Cytochrome P450 1A1 OS=Dicentrarchus labrax GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 54/186 (29.03%), Postives = 86/186 (46.24%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPD---------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK-LEDENMDMEEKFGI 465
            DLF AG DT S+ L W++  L+  P+                            +L+A + E  R    +P  +P     D  + G+ +PK   VF+N W I  D   W++P SF P+RFL   G+ L+ K    +++ FG G+R C G  +A   + L L  ++    +K L  E +DM  ++G+
Sbjct:  319 DLFGAGFDTISTALSWSVMYLVAYPEIEERLYQELKENVGLDRTPLLCDRPNLPFLEAFILEIFRHSSFLPFTIPHCTSKDTSLNGYFIPKDTCVFINQWQINHDPELWKDPSSFNPDRFLSADGTELN-KLEGEKVMVFGLGKRRCIGEVIARNGVFLFLAIIVQKLHFKTLPGEPLDMTPEYGL 503          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3A7_HUMAN (Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 58/178 (32.58%), Postives = 82/178 (46.07%), Query Frame = -1
Query:    4 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK-LEDENMDMEEKFG 453
            AG +TTSS L + + EL   PD                            YL  VV ETLRL P V + L R    DVEI G  +PKG  V + ++ +  D   W  P  F+PERF   N D     +   PFGSG R C G+  A+  + L L  ++ +F +K  ++  + ++ +FG
Sbjct:  305 AGYETTSSVLSFIIYELATHPDVQQKVQKEIDTVLPNKAPPTYDTVLQLEYLDMVVNETLRLFP-VAMRLERVCKKDVEINGMFIPKGVVVMIPSYVLHHDPKYWREPEKFLPERFSKKNKD-NIDPYIYTPFGSGPRNCIGMRFALVNMKLALVRVLQNFSFKPCKETQIPLKLRFG 480          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CP_MESAU (Cytochrome P450 2C25 OS=Mesocricetus auratus GN=CYP2C25 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 51/168 (30.36%), Postives = 78/168 (46.43%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AGT+TTS+TL +A+  LL+ P                             Y  A++ E  R    +P+ LP     D++   + +PKG  V  +  ++  D   + NP  F P  FL  N +FK  ++  +PF +G+RIC G  LA   L L L +++ +F  K
Sbjct:  293 DLFGAGTETTSTTLRYALLLLLKHPHVTAKVQEEIDQVVGRHRKPCMQDRSHMPYTDAMIHEVQRFIDLIPISLPHAVTCDIKFRDYFIPKGTTVITSLSSVLHDNKEFPNPEVFDPGHFLDKNGNFKKSDY-FMPFSAGKRICAGEGLARMELFLFLTTILQNFKLK 459          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP27A_RAT (Sterol 26-hydroxylase, mitochondrial OS=Rattus norvegicus GN=Cyp27a1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 54/169 (31.95%), Postives = 77/169 (45.56%), Query Frame = -1
Query:   49 DLFVAGTDTTSSTLEWAMAELLRSPDAY---------------------------LQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKG---RNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFD 465
            +L +AG DTTS+TL WA+  L ++P+                             L+AV+KETLRL+P VP         + EI GF+ PK  Q  +  + + RD   +  P SF P R+L    D        F  +PFG G R C G  +A   + L+L  LI  ++
Sbjct:  333 ELILAGVDTTSNTLTWALYHLSKNPEIQEALHKEVTGVVPFGKVPQNKDFAHMPLLKAVIKETLRLYPVVPTNSRIITEKETEINGFLFPKNTQFVLCHYVVSRDPSVFPEPESFQPHRWLRKREDDNSGIQHPFGSVPFGYGVRSCLGRRIAELEMQLLLSRLIQKYE 501          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP137_MYCTU (Putative cytochrome P450 137 OS=Mycobacterium tuberculosis GN=cyp137 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 53/158 (33.54%), Postives = 80/158 (50.63%), Query Frame = -1
Query:   31 LFVAGTDTTSSTLEWAMAELLRSPDA--------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDE 462
            L +AG +TT++TL WA   LL  PDA              +  AV+ ETLR+ P  PL   R A   + I G+ V  G ++ V+  AI R    +E+P  F PERFLG+    + + +  +PFG G + C G   ++R L  +L  L+   ++   D+
Sbjct:  298 LVLAGHETTATTLAWAFDLLLHHPDALRRVRAEAVGGGEAFTTAVINETLRVRPPAPLTA-RVAAQPLTIGGYRVEAGTRIVVHIIAINRSAEVYEHPHEFRPERFLGT----RPQTYAWVPFGGGVKRCLGANFSMRELITVLHVLLREGEFTAVDD 450          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C79F1_ARATH (Dihomomethionine N-hydroxylase OS=Arabidopsis thaliana GN=CYP79F1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.339e-15
Identity = 43/174 (24.71%), Postives = 79/174 (45.40%), Query Frame = -1
Query:   31 VAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSN-----LDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDE 456
            +A  D  ++ +EW + E+L++P+                            YL+A  +ET R+HP+   +    A  D  + G+ +PKG+ + V    +GR+   W++PL + PER L  +     +         + F +GRR C G+ +   M+ ++L   +  F+WKL  +
Sbjct:  328 IAAIDNPANNMEWTLGEMLKNPEILRKALKELDEVVGRDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPSHLARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYKPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCIGVKVGTIMMVMLLARFLQGFNWKLHQD 501          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2W1_HUMAN (Cytochrome P450 2W1 OS=Homo sapiens GN=CYP2W1 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.360e-15
Identity = 53/165 (32.12%), Postives = 76/165 (46.06%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            D+ +AGT+TTS+TL+WA   + R PD                            Y  AV+ E  R    +P + PR   AD ++ GF++PKG  V     ++  DE  W+ P  F P  FL +N  F  R    +PF +GRR+C G  LA   L L+   L+  +
Sbjct:  292 DMVMAGTETTSATLQWAALLMGRHPDVQGRVQEELDRVLGPGRTPRLEDQQALPYTSAVLHEVQRFITLLPHV-PRCTAADTQLGGFLLPKGTPVIPLLTSVLLDETQWQTPGQFNPGHFLDANGHFVKRE-AFLPFSAGRRVCVGERLARTELFLLFAGLLQRY 454          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2C4_RABIT (Cytochrome P450 2C4 OS=Oryctolagus cuniculus GN=CYP2C4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.360e-15
Identity = 52/177 (29.38%), Postives = 83/177 (46.89%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            DLF AGT+TTS+TL +++  LL+ P+                            Y  AV+ E  R    +P  LP     DV+   + +PKG  +  +  ++  DE  + NP  F P  FL  + +FK  ++  +PF +G+R+C G  LA   L L L S++ +F  +   E  D++
Sbjct:  290 DLFGAGTETTSTTLRYSLLLLLKHPEVAARVQEEIERVIGRHRSPCMQDRSHMPYTDAVIHEIQRFIDLLPTNLPHAVTRDVKFRNYFIPKGTDIITSLTSVLHDEKAFPNPKVFDPGHFLDESGNFKKSDY-FMPFSAGKRMCVGEGLARMELFLFLTSILQNFKLQSLVEPKDLD 465          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP27A_MOUSE2.556e-1533.14Sterol 26-hydroxylase, mitochondrial OS=Mus muscul... [more]
CP1A1_STECH2.556e-1528.49Cytochrome P450 1A1 OS=Stenotomus chrysops GN=cyp1... [more]
CP1A1_DICLA2.556e-1529.03Cytochrome P450 1A1 OS=Dicentrarchus labrax GN=cyp... [more]
CP3A7_HUMAN3.339e-1532.58Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1... [more]
CP2CP_MESAU3.339e-1530.36Cytochrome P450 2C25 OS=Mesocricetus auratus GN=CY... [more]
CP27A_RAT3.339e-1531.95Sterol 26-hydroxylase, mitochondrial OS=Rattus nor... [more]
CP137_MYCTU3.339e-1533.54Putative cytochrome P450 137 OS=Mycobacterium tube... [more]
C79F1_ARATH3.339e-1524.71Dihomomethionine N-hydroxylase OS=Arabidopsis thal... [more]
CP2W1_HUMAN4.360e-1532.12Cytochrome P450 2W1 OS=Homo sapiens GN=CYP2W1 PE=2... [more]
CP2C4_RABIT4.360e-1529.38Cytochrome P450 2C4 OS=Oryctolagus cuniculus GN=CY... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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