CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP254_MOUSE (Cytochrome P450 2C54 OS=Mus musculus GN=Cyp2c54 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.360e-15
Identity = 51/168 (30.36%), Postives = 78/168 (46.43%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF+ GT++ S+TL +A+  LL+ P                             Y  A++ E  R    VP  LP +   D++   + +PKG  V  +  ++ RD   + NP  F P  FL  N  FK  ++  +PF +G+RIC G  LA   L L L S++ +F+ K
Sbjct:  293 DLFIGGTESMSTTLRYALLLLLKYPHVTAKVQEEIEHVIGKHRRPCMQDRSHMPYTNAMIHEVQRFIDLVPNNLPHEVTCDIKFRNYFIPKGTTVITSLSSVLRDSKEFPNPEKFDPGHFLDENGKFKKSDY-FMPFSTGKRICAGEGLARMELFLFLTSILQNFNLK 459          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A2_HUMAN (Cytochrome P450 1A2 OS=Homo sapiens GN=CYP1A2 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 4.360e-15
Identity = 50/172 (29.07%), Postives = 79/172 (45.93%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            D+F AG DT ++ + W++  L+  P+                            YL+A + ET R    +P  +P     D  + GF +PK   VFVN W +  D   WE+P  F PERFL   G+ ++ K  + +++ FG G+R C G  LA   + L L  L+   ++ +
Sbjct:  313 DIFGAGFDTVTTAISWSLMYLVTKPEIQRKIQKELDTVIGRERRPRLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTTRDTTLNGFYIPKKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAIN-KPLSEKMMLFGMGKRRCIGEVLAKWEIFLFLAILLQQLEFSV 483          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2L1_PANAR (Cytochrome P450 2L1 OS=Panulirus argus GN=CYP2L1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.695e-15
Identity = 52/165 (31.52%), Postives = 74/165 (44.85%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPD---------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            DLF AGT+TTS+ + W +  L++ P+                           AY +A + E  R+   VPL +      D E+AG+ +PKG  V  +     RD   WE P  F PE FL     F  R   L+ F  GRR+C G  LA   L + L +++ +F
Sbjct:  294 DLFGAGTETTSTMIRWTILYLMKYPEVQAKIQREIDAAVPRGTLPSLEHKDKLAYFEATIHEVHRIVSLVPLGVSHYTNQDTELAGYRLPKGTVVMSHLECCHRDPSYWEKPNEFYPEHFLDDQGKFVKRE-HLVNFSVGRRVCVGESLARMELFVFLSAILQNF 457          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2E1_HUMAN (Cytochrome P450 2E1 OS=Homo sapiens GN=CYP2E1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.695e-15
Identity = 53/168 (31.55%), Postives = 79/168 (47.02%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AGT+TTS+TL + +  L++ P+                            Y+ AVV E  R    VP  LP +A  D    G+++PKG  V     ++  D   + +P  F PE FL  N  FK  ++   PF +G+R+C G  LA   L L+L +++  F+ K
Sbjct:  295 DLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDRVIGPSRIPAIKDRQEMPYMDAVVHEIQRFITLVPSNLPHEATRDTIFRGYLIPKGTVVVPTLDSVLYDNQEFPDPEKFKPEHFLNENGKFKYSDY-FKPFSTGKRVCAGEGLARMELFLLLCAILQHFNLK 461          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2C5_RABIT (Cytochrome P450 2C5 OS=Oryctolagus cuniculus GN=CYP2C5 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 5.695e-15
Identity = 52/177 (29.38%), Postives = 82/177 (46.33%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            DLF AGT+TTS+TL +++  LL+ P+                            Y  AV+ E  R    +P  LP     DV    + +PKG  +  +  ++  DE  + NP  F P  FL  + +FK  ++  +PF +G+R+C G  LA   L L L S++ +F  +   E  D++
Sbjct:  290 DLFGAGTETTSTTLRYSLLLLLKHPEVAARVQEEIERVIGRHRSPCMQDRSRMPYTDAVIHEIQRFIDLLPTNLPHAVTRDVRFRNYFIPKGTDIITSLTSVLHDEKAFPNPKVFDPGHFLDESGNFKKSDY-FMPFSAGKRMCVGEGLARMELFLFLTSILQNFKLQSLVEPKDLD 465          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP27A_HUMAN (Sterol 26-hydroxylase, mitochondrial OS=Homo sapiens GN=CYP27A1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.695e-15
Identity = 56/180 (31.11%), Postives = 83/180 (46.11%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDAY---------------------------LQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGR---NFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            +L +AG DTTS+TL WA+  L + P+                             L+AV+KETLRL+P VP    R    ++E+ GF+ PK  Q     + + RD   +  P SF P R+L ++     R    F  +PFG G R C G  +A   + L+L  LI  +   L  E  +++
Sbjct:  331 ELLMAGVDTTSNTLTWALYHLSKDPEIQEALHEEVVGVVPAGQVPQHKDFAHMPLLKAVLKETLRLYPVVPTN-SRIIEKEIEVDGFLFPKNTQFVFCHYVVSRDPTAFSEPESFQPHRWLRNSQPATPRIQHPFGSVPFGYGVRACLGRRIAELEMQLLLARLIQKYKVVLAPETGELK 509          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3A6_RABIT (Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.438e-15
Identity = 62/183 (33.88%), Postives = 82/183 (44.81%), Query Frame = -1
Query:   40 LHKFQVI*QGFI*QDLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 507
            L   +V+ Q  I   +  AG +TTSSTL + M  L   PD                            YL  VV ETLRL+P +   L R    DV+I G  +PKG  V +  +A+ RD   W  P  F PERF   N D     +   PFG+G R C G+  A+  + L L  L+ +F +KL
Sbjct:  288 LDDIEVVAQSII---ILFAGYETTSSTLSFIMHLLATHPDVQQKLQEEIDTLLPNKELATYDTLVKMEYLDMVVNETLRLYP-IAGRLERVCKKDVDINGTFIPKGTIVMMPTYALHRDPQHWTEPDEFRPERFSKKNKD-NINPYIYHPFGAGPRNCLGMRFALMNIKLALVRLMQNFSFKL 465          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2A5_MOUSE (Cytochrome P450 2A5 OS=Mus musculus GN=Cyp2a5 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.438e-15
Identity = 51/177 (28.81%), Postives = 81/177 (45.76%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            +LF AGT+T S+TL +    L++ PD                            Y +AV+ E  R    +P+ L R+   D +   F++PKG +VF    ++ +D   + NP  F P+ FL     FK +N   +PF  G+R C G  LA   L L L +++ +F +K      D++
Sbjct:  297 NLFFAGTETVSTTLRYGFLLLMKHPDIEAKVHEEIDRVIGRNRQPKYEDRMKMPYTEAVIHEIQRFADMIPMGLARRVTKDTKFRDFLLPKGTEVFPMLGSVLKDPKFFSNPKDFNPKHFLDDKGQFK-KNDAFVPFSIGKRYCFGEGLARMELFLFLTNIMQNFHFKSTQAPQDID 472          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP27B_HUMAN (25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial OS=Homo sapiens GN=CYP27B1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.438e-15
Identity = 58/170 (34.12%), Postives = 80/170 (47.06%), Query Frame = -1
Query:   49 DLFVAGTDTTSSTLEWAMAELLRSPD------------------AY-----------LQAVVKETLRLHPAVP--LLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFD 465
            +L +AG DT S+TL WA+ EL R P+                  AY           L+AVVKE LRL+P VP    +P K   D+ +  +I+PK   V +  +A  RD   +  P SF P R+LG         F  +PFG G+R C G  LA   L + L  ++  F+
Sbjct:  313 ELLLAGVDTVSNTLSWALYELSRHPEVQTALHSEITAALSPGSSAYPSATVLSQLPLLKAVVKEVLRLYPVVPGNSRVPDK---DIHVGDYIIPKNTLVTLCHYATSRDPAQFPEPNSFRPARWLGEGP--TPHPFASLPFGFGKRSCMGRRLAELELQMALAQILTHFE 477          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP270_RAT (Cytochrome P450 2C70 OS=Rattus norvegicus GN=Cyp2c70 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.438e-15
Identity = 55/168 (32.74%), Postives = 78/168 (46.43%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AGT+TTSST+++ +  LL+ P+                            Y  AV+ E  R    VP+ LPRK   DVE  G+ +PKG  V     +   D+  + NP  F P  FL    +FK  ++  + F +GRR C G  LA   + L+L S++  F  K
Sbjct:  292 DLFGAGTETTSSTIKYGLLLLLKYPEVTAKIQEEITRVIGRHRRPCMQDRNHMPYTDAVLHEIQRYIDFVPIPLPRKTTQDVEFRGYHIPKGTSVMACLTSALHDDKEFPNPEKFDPGHFLDEKGNFKKSDY-FMAFSAGRRACIGEGLARMEMFLILTSILQHFTLK 458          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP254_MOUSE4.360e-1530.36Cytochrome P450 2C54 OS=Mus musculus GN=Cyp2c54 PE... [more]
CP1A2_HUMAN4.360e-1529.07Cytochrome P450 1A2 OS=Homo sapiens GN=CYP1A2 PE=1... [more]
CP2L1_PANAR5.695e-1531.52Cytochrome P450 2L1 OS=Panulirus argus GN=CYP2L1 P... [more]
CP2E1_HUMAN5.695e-1531.55Cytochrome P450 2E1 OS=Homo sapiens GN=CYP2E1 PE=1... [more]
CP2C5_RABIT5.695e-1529.38Cytochrome P450 2C5 OS=Oryctolagus cuniculus GN=CY... [more]
CP27A_HUMAN5.695e-1531.11Sterol 26-hydroxylase, mitochondrial OS=Homo sapie... [more]
CP3A6_RABIT7.438e-1533.88Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CY... [more]
CP2A5_MOUSE7.438e-1528.81Cytochrome P450 2A5 OS=Mus musculus GN=Cyp2a5 PE=2... [more]
CP27B_HUMAN7.438e-1534.1225-hydroxyvitamin D-1 alpha hydroxylase, mitochond... [more]
CP270_RAT7.438e-1532.74Cytochrome P450 2C70 OS=Rattus norvegicus GN=Cyp2c... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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