CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_SPAAU (Cytochrome P450 1A1 OS=Sparus aurata GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.438e-15
Identity = 53/186 (28.49%), Postives = 87/186 (46.77%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPD---------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLE-DENMDMEEKFGI 465
            DLF AG DT S+ L W++  L+  P+                            +L+A + E  R    +P  +P  +  D  + G+ +PK   VF+N W I  D   W++P SF P+RFL   G+ L+ K    +++ FG G+R C G  +A   + L L  L+ +  +  +  E +DM  ++G+
Sbjct:  318 DLFGAGFDTISTALSWSVMYLVAYPEIQERLYQEMKESVGLDRTPCLSDKPKLPFLEAFILEIFRHSSFLPFTIPHCSSKDTSLNGYFIPKDTCVFINQWQINHDPELWKDPSSFNPDRFLNTDGTELN-KLEGEKMMVFGLGKRRCIGEVIARNEVFLFLAILVQNLRFHAKPGEPLDMTPEYGL 502          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3AR_ONCMY (Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp3a27 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.714e-15
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = -1
Query:   31 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDE 384
            YL  V+ E+LRL+P  P L  R A   VEI G ++PK   V V  W + RD   W +P  F PERF   N +     +  +PFG+G R C G+  A+ M+ L +  ++ SF + + DE
Sbjct:  360 YLDCVLNESLRLYPIAPRL-ERVAKKTVEINGIVIPKDCIVLVPTWTLHRDPEIWSDPEEFKPERFSKENKE-SIDPYTYMPFGAGPRNCIGMRFALIMIKLAMVEILQSFTFSVCDE 475          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2E1_MACMU (Cytochrome P450 2E1 OS=Macaca mulatta GN=CYP2E1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.714e-15
Identity = 52/168 (30.95%), Postives = 79/168 (47.02%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AGT+TTS+TL + +  L++ P+                            Y+ AVV E  R    VP  LP +A  D    G+I+PKG  +     ++  D   + +P  F PE FL  +  FK  ++   PF +G+R+C G  LA   L L+L +++  F+ K
Sbjct:  295 DLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDRVIGPSRIPAIKDRQEMPYMDAVVHEIQRFITLVPSNLPHEATRDTIFRGYIIPKGTVIVPTLDSVLYDNQEFPDPEKFKPEHFLDESGKFKYSDY-FKPFSAGKRVCAGEGLARMELFLLLSAILQHFNLK 461          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP27A_RABIT (Sterol 26-hydroxylase, mitochondrial OS=Oryctolagus cuniculus GN=CYP27A1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.714e-15
Identity = 53/180 (29.44%), Postives = 82/180 (45.56%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDAY---------------------------LQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRN---FELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            +L +AG DTTS+TL WA+  L ++P+                             L+AV+KETLRL+P +P         ++E+ GF+ PK  Q     +   RD  T+  P +F P R+L        +    F  +PFG G R C G  +A   + L+L  LI  ++  L  E  +++
Sbjct:  334 ELLLAGVDTTSNTLTWALYHLSKNPEIQAALRKEVVGVVAAGQVPQHKDFAHMPLLKAVLKETLRLYPVIPANSRIIVDKEIEVGGFLFPKNTQFVFCHYVTSRDPSTFSEPDTFWPYRWLRKGQPETSKTQHPFGSVPFGYGVRACLGRRIAELEMQLLLARLIQRYELMLAPETGEVQ 513          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP238_MOUSE (Cytochrome P450 2C38 OS=Mus musculus GN=Cyp2c38 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.714e-15
Identity = 52/178 (29.21%), Postives = 86/178 (48.31%), Query Frame = -1
Query:   19 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK--LEDENMDM 465
            +LF AGT+TTS+TL +A+  L++ PD                            Y  A++ E  R    VP  LP     D++   +I+PKG  V  +  ++  D   + NP  F P  FL +N +FK  ++  + F +G+R+C G  LA   L L+L +++ +F  K  +  +++DM
Sbjct:  293 NLFAAGTETTSTTLRYALLLLMKYPDVTAKVQEEIDHVVGRHRSPCMQDRSHMPYTDAMIHEVQRFINLVPNNLPHAVTCDIKFRNYIIPKGTTVVTSLTSVLHDSKEFPNPEMFDPGHFLDANGNFKKSDY-FMTFSAGKRVCAGEGLARMELFLILTTILQNFKLKSLVHPKDIDM 469          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A2_PONAB (Cytochrome P450 1A2 OS=Pongo abelii GN=CYP1A2 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 9.714e-15
Identity = 50/172 (29.07%), Postives = 79/172 (45.93%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            D+F AG DT ++ + W++  L+  P+                            YL+A + ET R    +P  +P     D  + GF +PK   VFVN W +  D   WE+P  F PERFL   G+ ++ K  + +++ FG G+R C G  LA   + L L  L+   ++ +
Sbjct:  313 DIFGAGFDTVTTAISWSLMYLVTKPEIQRKIQKELDTMIGRGRRPRLSDRPQLPYLKAFILETFRHSSFLPFTIPHSTTRDTTLNGFYIPKECCVFVNQWQVNHDPELWEDPSEFWPERFLTTDGTAIN-KPLSEKVMLFGMGKRRCIGEVLANWEVFLFLAILLQQLEFSV 483          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A2_BALAC (Cytochrome P450 1A2 OS=Balaenoptera acutorostrata GN=CYP1A2 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 9.714e-15
Identity = 50/185 (27.03%), Postives = 83/185 (44.86%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSN--LDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL-EDENMDMEEKFGI 465
            D+F AG D  ++ + W++  L+ +P+                            YL+A + ET R    VP  +P   + D  + GF +PK   VF+N W +  D   W +P  F PERFL S+     K  + +++ FG G+R C G  LA   + L L  L+   ++ +     +D+   +G+
Sbjct:  313 DIFAAGFDPITTAISWSLLYLVTNPEIQRKIQQELDTVIGRARRPRLSDRSQLPYLEAFILETFRHSSFVPFTIPHSTIRDTTLNGFYIPKELCVFINQWQVNHDPKLWGDPSEFRPERFLTSHDTTISKTLSEKVMLFGMGKRRCIGEVLAKWEIFLFLAILLQQLEFSVPPGVKVDLTPTYGL 497          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C518B_DICDI (Probable cytochrome P450 518B1 OS=Dictyostelium discoideum GN=cyp518b1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.714e-15
Identity = 56/179 (31.28%), Postives = 80/179 (44.69%), Query Frame = -1
Query:   34 DLFVAGTDTTSSTLEWAMAELLRSP----------------------------------DAYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTW-ENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED 465
            +L  AGTDT SST EW +  L+ +P                                       A +KE LRL PA P  +PR +    E+ G  +PKG  +F + ++I RDE  W EN   F PERFL    D    N+   P+G G+R+C G   +   L++ L +++ +F  K  D
Sbjct:  291 ELLAAGTDTNSSTSEWFLTYLVNNPIYQDKIYDELIGALKINKPLKGSDVLINLSHRPLTPLFNATLKEVLRLIPATPFSVPRMSNEGFEVDGIKIPKGTYLFPSMYSIFRDEKYWGENANKFYPERFL---TDSHSNNY--FPYGVGKRMCLGSNFSQHELYICLTNIVLNFKIKSID 464          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3A8_MACFA (Cytochrome P450 3A8 OS=Macaca fascicularis GN=CYP3A8 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.269e-14
Identity = 54/164 (32.93%), Postives = 75/164 (45.73%), Query Frame = -1
Query:   43 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 453
            AG +TTSS L + + EL   PD                            YL  VV ETLR+ P + + L R    DVEI G  +PKG  V + ++A+  D   W  P  F+PERF   N D     +   PFGSG R C G+  A+  + L +  ++ +F +K
Sbjct:  305 AGYETTSSVLSFIIYELATHPDVQQKLQEEIDTVLPNKAPPTYDTVLQMEYLDMVVNETLRIFP-IAMRLERVCKKDVEINGIFIPKGVVVMIPSYALHHDPKYWPEPEKFLPERFSKKNND-NIDPYIYTPFGSGPRNCIGMRFALMNMKLAIIRVLQNFSFK 466          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CQ_MESAU (Cytochrome P450 2C26 OS=Mesocricetus auratus GN=CYP2C26 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.269e-14
Identity = 49/168 (29.17%), Postives = 77/168 (45.83%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AGT+TTS+TL +A+  LL+ P                             Y  A++ E  R    +P  LP     D++   + +PKG  +  +  ++  D   + NP  F P  FL  N +FK  ++  +PF +G+R+C G  LA   L L L +++ +F  K
Sbjct:  293 DLFAAGTETTSTTLRYALLLLLKHPHVTAKVQEEIDQVVGRHRNPCMQDRSHMPYTDAMIHEVQRFIDLIPTNLPHAVTCDIKFRDYFIPKGTTIITSLSSVLHDSKEFPNPEVFDPGHFLDKNGNFKKSDY-FMPFSTGKRMCAGEGLARMELFLFLTTILQNFKLK 459          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP1A1_SPAAU7.438e-1528.49Cytochrome P450 1A1 OS=Sparus aurata GN=cyp1a1 PE=... [more]
CP3AR_ONCMY9.714e-1538.14Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp... [more]
CP2E1_MACMU9.714e-1530.95Cytochrome P450 2E1 OS=Macaca mulatta GN=CYP2E1 PE... [more]
CP27A_RABIT9.714e-1529.44Sterol 26-hydroxylase, mitochondrial OS=Oryctolagu... [more]
CP238_MOUSE9.714e-1529.21Cytochrome P450 2C38 OS=Mus musculus GN=Cyp2c38 PE... [more]
CP1A2_PONAB9.714e-1529.07Cytochrome P450 1A2 OS=Pongo abelii GN=CYP1A2 PE=2... [more]
CP1A2_BALAC9.714e-1527.03Cytochrome P450 1A2 OS=Balaenoptera acutorostrata ... [more]
C518B_DICDI9.714e-1531.28Probable cytochrome P450 518B1 OS=Dictyostelium di... [more]
CP3A8_MACFA1.269e-1432.93Cytochrome P450 3A8 OS=Macaca fascicularis GN=CYP3... [more]
CP2CQ_MESAU1.269e-1429.17Cytochrome P450 2C26 OS=Mesocricetus auratus GN=CY... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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