CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CF_RABIT (Cytochrome P450 2C15 (Fragment) OS=Oryctolagus cuniculus GN=CYP2C15 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.269e-14
Identity = 51/177 (28.81%), Postives = 83/177 (46.89%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            DLF AGT+TTS+TL  ++  LL+ P+                            Y  AV+ E  R    +P+ LP     D++   + +PKG  +  +  ++  DE  + NP  F P  FL  + +FK  ++  +PF +G+R+C G  LA   L L L S++ +F  +   E  D++
Sbjct:  181 DLFGAGTETTSTTLSISLLLLLKHPEVAAKVQEEIERVIGRHRSPCMQDRSRMPYTDAVIHEIQRYIDLIPINLPHAVTRDIKFRNYFIPKGMNIITSLTSVLHDEKEFPNPKVFDPGHFLDESGNFKKSDY-FMPFSAGKRMCVGEGLARMELFLFLTSILQNFKLQSLVEPKDLD 356          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1B1_HUMAN (Cytochrome P450 1B1 OS=Homo sapiens GN=CYP1B1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.269e-14
Identity = 52/184 (28.26%), Postives = 80/184 (43.48%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSN-LDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLE-DENMDMEEKFGI 465
            D+F A  DT S+ L+W +    R PD                            Y+ A + E +R    VP+ +P    A+  + G+ +PK   VFVN W++  D L W NP +F P RFL  + L  K     ++ F  G+R C G  L+   L L +  L +  D++   +E   M   +G+
Sbjct:  326 DIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGRDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYHIPKDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGEELSKMQLFLFISILAHQCDFRANPNEPAKMNFSYGL 509          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C340_ORYLA (Cytochrome P450 3A40 OS=Oryzias latipes GN=cyp3a40 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.269e-14
Identity = 52/165 (31.52%), Postives = 77/165 (46.67%), Query Frame = -1
Query:   40 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 453
            AG +TTSS+L +    L  +P+                            YL  VV E+LRL+P +   L R A A VE+ G ++PK   V V  W + RD   W  P  F PERF   N D     +  +PFG+G R C G+  A+ M+ L +  ++ ++D+ +
Sbjct:  306 AGYETTSSSLTFLAYNLATNPEVMKKLQKEIDATFPNKAPVQYVPLMEMEYLDCVVNESLRLYP-IAARLERVAKATVEVNGLVIPKDMVVMVPTWPLHRDPELWPEPEKFKPERFSKENKD-TFDPYTYMPFGAGPRNCIGMRFALVMMKLAVVEILQTYDFSV 468          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP343_HUMAN (Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 56/167 (33.53%), Postives = 73/167 (43.71%), Query Frame = -1
Query:   43 LFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 462
            +  A  DTTS+TL + M EL   PD                            YL  VV ETLRL P V  +  R    D+EI G  +PKG  V V  +A+  D   W  P  F PERF   N D     +  IPFG+G R C G+  A+  + L +   + +F +K
Sbjct:  302 IIFAAYDTTSTTLPFIMYELATHPDVQQKLQEEIDAVLPNKAPVTYDALVQMEYLDMVVNETLRLFPVVSRVT-RVCKKDIEINGVFIPKGLAVMVPIYALHHDPKYWTEPEKFCPERFSKKNKDSIDL-YRYIPFGAGPRNCIGMRFALTNIKLAVIRALQNFSFK 466          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2R1_HUMAN (Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 54/183 (29.51%), Postives = 85/183 (46.45%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMA----------------ELLRSPDA-----------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENM-DMEEKFGI 465
            +L +AGT+TT++ L WA+                 +L+  P+            Y +AV+ E LR    VPL +      D  + G+ +PKG  V  N +++  DE  W +P  F PERFL S+  +  +   L+PF  GRR C G  LA   + L   +L+  F      E + D++ + G+
Sbjct:  306 ELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEIDLIMGPNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSS-GYFAKKEALVPFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPHELVPDLKPRLGM 487          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2E1_MOUSE (Cytochrome P450 2E1 OS=Mus musculus GN=Cyp2e1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 52/168 (30.95%), Postives = 79/168 (47.02%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AGT+TTS+TL + +  L++ P+                            Y+ AVV E  R    VP  LP +A  D    G+++PKG  V     ++  D   + +P +F PE FL  N  FK  ++    F +G+R+C G  LA   L L+L +++  F+ K
Sbjct:  295 DLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDRVIGPSRAPAVRDRMNMPYMDAVVHEIQRFINLVPSNLPHEATRDTVFRGYVIPKGTVVIPTLDSLLFDNYEFPDPETFKPEHFLNENGKFKYSDY-FKAFSAGKRVCVGEGLARMELFLLLSAILQHFNLK 461          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CS_MESAU (Cytochrome P450 2C28 OS=Mesocricetus auratus GN=CYP2C28 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 49/177 (27.68%), Postives = 85/177 (48.02%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            D+FVAG++TTS+TL + +  LL+  +                            Y  A+V E  R    +P  +P  A  +V+   +++PKG  +  +  ++  D+  + NP  F P  FL  N +FK  ++  +PF  G+R+C G  LA   L L+L +++ +FD K   +  D++
Sbjct:  293 DVFVAGSETTSTTLRYGLLLLLKHKEVTAKVQKEIDHVIGRDRSPCMQDRTRMPYTDAMVHEVQRYVNLIPNNVPHAATCNVKFRNYVIPKGTDLITSLTSVLHDDKEFPNPKIFDPAHFLDENGNFKKSDY-FMPFSIGKRMCMGEALARMELFLLLTTILQNFDLKSLADTKDID 468          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CR_MESAU (Cytochrome P450 2C27 OS=Mesocricetus auratus GN=CYP2C27 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 49/169 (28.99%), Postives = 77/169 (45.56%), Query Frame = -1
Query:   43 QDLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 468
            +DLF AGT+TTS+TL +A+  LL+ P                             Y  A++ E  R    +P  LP     D++   + +PKG  +  +  ++  D   + NP  F P  FL  N  FK  ++  +PF +G+R+C G  LA   L L L +++ +F  K
Sbjct:  292 RDLFAAGTETTSTTLRYALLLLLKHPHVTAKVQEEIDQVVGRHRNPCMQDRSHMPYTDAMIHEVQRFIDLIPTNLPHAVTCDIKFRDYFIPKGTTIITSLSSVLHDSKEFPNPEVFDPGHFLDKNGKFKKSDY-FMPFSTGKRMCAGEGLARMELFLFLTTILQNFKLK 459          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CL_CANFA (Cytochrome P450 2C21 (Fragment) OS=Canis familiaris GN=CYP2C21 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 51/168 (30.36%), Postives = 77/168 (45.83%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            D+F AGT+TTS+TL + +  LL+ PD                            Y  AVV E  R    VP  LP     D++   +++PKG  +  +  ++  DE  + NP  F P  FL  N  FK  ++  + F +G+R+C G  LA   L L+L +++  F  K
Sbjct:  290 DVFSAGTETTSTTLRYGLLVLLKHPDVTAKVQEEIHRVVGRHRSPCMQDRSCMPYTDAVVHEIQRYIDLVPNNLPHSVTQDIKFREYLIPKGTTILTSLTSVLHDEKGFPNPDQFDPGHFLDENGSFKKSDY-FMAFSAGKRVCVGEGLARMELFLLLTNILQHFTLK 456          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2A1_RAT (Cytochrome P450 2A1 OS=Rattus norvegicus GN=Cyp2a1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 52/177 (29.38%), Postives = 80/177 (45.20%), Query Frame = -1
Query:   13 LFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDMEE 462
            LF AG++T SSTL +    L++ PD                            Y QAV+ E  R     PL +PR+ + +    GF +PKG  VF    ++  D   + +P  F P+ FL      K +N   +PF +G+R C G  LA   L L+L +++ +F +K   +  D+ E
Sbjct:  296 LFFAGSETVSSTLRYGFLLLMKHPDVEAKVHEEIEQVIGRNRQPQYEDHMKMPYTQAVINEIQRFSNLAPLGIPRRIIKNTTFRGFFLPKGTDVFPILGSLMTDPKFFPSPKDFDPQNFLDDKGQLK-KNAAFLPFSTGKRFCLGDGLAKMELFLLLTTILQNFRFKFPMKLEDINE 471          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP2CF_RABIT1.269e-1428.81Cytochrome P450 2C15 (Fragment) OS=Oryctolagus cun... [more]
CP1B1_HUMAN1.269e-1428.26Cytochrome P450 1B1 OS=Homo sapiens GN=CYP1B1 PE=1... [more]
C340_ORYLA1.269e-1431.52Cytochrome P450 3A40 OS=Oryzias latipes GN=cyp3a40... [more]
CP343_HUMAN1.657e-1433.53Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE... [more]
CP2R1_HUMAN1.657e-1429.51Vitamin D 25-hydroxylase OS=Homo sapiens GN=CYP2R1... [more]
CP2E1_MOUSE1.657e-1430.95Cytochrome P450 2E1 OS=Mus musculus GN=Cyp2e1 PE=1... [more]
CP2CS_MESAU1.657e-1427.68Cytochrome P450 2C28 OS=Mesocricetus auratus GN=CY... [more]
CP2CR_MESAU1.657e-1428.99Cytochrome P450 2C27 OS=Mesocricetus auratus GN=CY... [more]
CP2CL_CANFA1.657e-1430.36Cytochrome P450 2C21 (Fragment) OS=Canis familiari... [more]
CP2A1_RAT1.657e-1429.38Cytochrome P450 2A1 OS=Rattus norvegicus GN=Cyp2a1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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