CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP270_MOUSE (Cytochrome P450 2C70 OS=Mus musculus GN=Cyp2c70 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 55/177 (31.07%), Postives = 84/177 (47.46%), Query Frame = -1
Query:   22 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK--LEDENMD 465
            DLF AGT+TTSST+++ +  LL+ P+                            Y  AV+ E  R    VP+  PRK   DVE  G+ +PKG  V     ++  D+  + NP  F P  FL    +FK  ++  + F +GRR C G  LA   + L+L +++  F  K  ++ E++D
Sbjct:  292 DLFGAGTETTSSTVKYGLLLLLKYPEVTAKIQEEIAHVIGRHRRPTMQDRNHMPYTDAVLHEIQRYIDFVPIPSPRKTTQDVEFRGYHIPKGTSVMACLTSVLNDDKEFPNPEKFDPGHFLDEKGNFKKSDY-FVAFSAGRRACIGEGLARMEMFLILTNILQHFTLKPLVKPEDID 467          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_LIZAU (Cytochrome P450 1A1 OS=Liza aurata GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 53/186 (28.49%), Postives = 84/186 (45.16%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPD---------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFD-WKLEDENMDMEEKFGI 465
            DLF AG DT S+ L W++  L+  P+                             L+A + E  R    +P  +P     D  + G+ +PK   VF+N W I  D   W+ P SF P+RFL   G+ ++ K    +++ FG G+R C G  +A   +++ L  LI     + L  E +DM  ++G+
Sbjct:  318 DLFGAGLDTISTALSWSVMYLVAYPEIQERLYQELKENVGLDRTPVLSDRNNLPLLEAFILEIFRHSSFLPFTIPHCTTKDTSLNGYYIPKDTCVFINQWQINHDPELWKEPSSFNPDRFLSADGTEVN-KVDGEKVMVFGLGKRRCIGEVIARNEVYMFLAILIQKLHFYNLPGEPLDMTPEYGL 502          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3AT_PIG (Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.164e-14
Identity = 61/186 (32.80%), Postives = 80/186 (43.01%), Query Frame = -1
Query:   43 PPFCLHKFQVI*QGFI*QDLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 519
            P   L   +++ QG I      AG +TTSS L     EL   PD                            YL  VV ETLRL+P +   L R    DVEI G  VPKG  V V  + + RD   W  P  F PERF   + D     +  +PFG+G R C G+  A+  + L L  ++ +F +K
Sbjct:  286 PHKSLSNEELVAQGII---FIFAGYETTSSALSLLAYELATHPDVQQKLQEEIEATFPNKAPPTYDALAQMEYLDMVVNETLRLYP-IAARLERACKKDVEIHGVFVPKGTVVVVPVFVLHRDPDLWPEPEEFRPERFSKKHKD-TINPYTYLPFGTGPRNCIGMRFALMNMKLALVRVLQNFSFK 466          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2F2_RAT (Cytochrome P450 2F2 OS=Rattus norvegicus GN=Cyp2f2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.164e-14
Identity = 51/178 (28.65%), Postives = 80/178 (44.94%), Query Frame = -1
Query:   19 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK--LEDENMDM 465
            +L   GT+T  +TL  A   L++ P                             Y  AV+ E  R    +P+ LP + + D    GF++PKG  V      +  D   ++ P  F PE FL +N  FK ++   +PF +GRR+C G PLA   L + L S++ +F     +E E++D+
Sbjct:  294 NLLFGGTETVGTTLRHAFLILMKYPKVQARVQEEIDCVVGRSRMPTLEDRASMPYTDAVIHEVQRFADVIPMNLPHRVIRDTPFRGFLIPKGTDVITLLNTVHYDSDQFKTPQEFNPEHFLDANQSFK-KSPAFMPFSAGRRLCLGEPLARMELFIYLTSILQNFTLHPLVEPEDIDL 470          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CB_RAT (Cytochrome P450 2C11 OS=Rattus norvegicus GN=Cyp2c11 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.164e-14
Identity = 52/168 (30.95%), Postives = 77/168 (45.83%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            D+F AGT+TTS+TL + +  LL+  D                            Y  AVV E  R    VP  LP     D++   + +PKG  V V+  +I  D+  + NP  F P  FL    +FK  ++  +PF +G+RIC G  LA   L L   +++ +F+ K
Sbjct:  293 DMFGAGTETTSTTLRYGLLLLLKHVDVTAKVQEEIERVIGRNRSPCMKDRSQMPYTDAVVHEIQRYIDLVPTNLPHLVTRDIKFRNYFIPKGTNVIVSLSSILHDDKEFPNPEKFDPGHFLDERGNFKKSDY-FMPFSAGKRICAGEALARTELFLFFTTILQNFNLK 459          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A3_ONCMY (Cytochrome P450 1A3 OS=Oncorhynchus mykiss GN=cyp1a3 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.164e-14
Identity = 51/186 (27.42%), Postives = 85/186 (45.70%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDAY---------------------------LQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDEN-MDMEEKFGI 465
            DLF AG DT S+ L WA+  L+  P+                             L+A + E  R    +P  +P   + D  + G+ +PK   VF+N W +  D   W+ P SF P+RFL   G+ L+ K    +++ FG G+R C G  +    ++L L  L+    ++ +  + +DM  ++G+
Sbjct:  318 DLFGAGFDTISTALSWAVVYLVAYPETQERLHQELKEKVGMIRTPRLSDKINLPLLEAFILEIFRHSSFLPFTIPHCTIKDTSLNGYFIPKDTCVFINQWQVNHDPELWKEPSSFNPDRFLSADGTELN-KLEGEKVLVFGMGKRRCIGEAIGRNEVYLFLAILLQRLRFQEKPGHPLDMTPEYGL 502          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A2_CALJA (Cytochrome P450 1A2 OS=Callithrix jacchus GN=CYP1A2 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 2.164e-14
Identity = 51/186 (27.42%), Postives = 83/186 (44.62%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL-EDENMDMEEKFGI 465
            D+F AG DT ++ + W++  L+  P+                            YL+A + ET R    VP  +P     D  + GF +PK   VF+N W +  D   W +P  F PERFL   G+ L+ K  + +++ FG G+R C G  L    + L L  L+   ++ +     +D+   +G+
Sbjct:  313 DIFGAGFDTITTAISWSLMYLVTKPEIQRKIQKELDTVIGRGRRPRLSDRPQLPYLEAFILETFRHSSFVPFTIPHSTTRDTTLKGFYIPKECCVFINQWQVNHDPQLWGDPSEFRPERFLTAKGTALN-KPLSEKILLFGLGKRRCIGEVLGKWEVFLFLAILLQQLEFSVPPGVQIDLTPTYGL 497          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2K1_ONCMY (Cytochrome P450 2K1 OS=Oncorhynchus mykiss GN=cyp2k1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.826e-14
Identity = 53/184 (28.80%), Postives = 81/184 (44.02%), Query Frame = -1
Query:    4 DLFVAGTDTTSSTLEWAMAELLRSPDA--------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK----LEDENMDMEEKFG 465
            +LF AGTDTT +TL W +  + + P                            Y  AV+ ET RL   VP+ +P     DV   G+ + KG  V     ++ +D+  WE+P +F P  FL     F  R+   + F +GRR+C G  LA   L L   SL+  F +     + ++++D+    G
Sbjct:  306 NLFSAGTDTTGTTLRWGLLLMTKYPHIQDQVQEEISRVIGSRQTLVEDRKNLPYTDAVIHETQRLANIVPMSVPHTTSRDVTFQGYFIKKGTSVIPLLTSVLQDDSEWESPNTFNPSHFLDEQGGFVKRD-AFMAFSAGRRVCLGEGLARMELFLFFTSLLQRFRFSPPPGVTEDDLDLTPLLG 488          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2E1_RAT (Cytochrome P450 2E1 OS=Rattus norvegicus GN=Cyp2e1 PE=1 SV=4)

HSP 1 Score: 78.1814 bits (191), Expect = 2.826e-14
Identity = 52/168 (30.95%), Postives = 78/168 (46.43%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AGT+TTS+TL + +  L++ P+                            Y+ AVV E  R    VP  LP +A  D    G+++PKG  V     ++  D   + +P  F PE FL  N  FK  ++    F +G+R+C G  LA   L L+L +++  F+ K
Sbjct:  295 DLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDRVIGPSRVPAVRDRLDMPYMDAVVHEIQRFINLVPSNLPHEATRDTVFQGYVIPKGTVVIPTLDSLLYDSHEFPDPEKFKPEHFLNENGKFKYSDY-FKAFSAGKRVCVGEGLARMELFLLLSAILQHFNLK 461          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CI_HUMAN (Cytochrome P450 2C18 OS=Homo sapiens GN=CYP2C18 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.826e-14
Identity = 49/177 (27.68%), Postives = 85/177 (48.02%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            D+F AGT+TTS+TL + +  LL+ P+                            Y  AVV E  R    +P  LP     DV+   +++PKG  +  +  ++  ++  + NP  F P  FL  + +FK  ++  +PF +G+R+C G  LA   L L L +++ +F+ K + +  D++
Sbjct:  293 DMFGAGTETTSTTLRYGLLLLLKYPEVTAKVQEEIECVVGRNRSPCMQDRSHMPYTDAVVHEIQRYIDLLPTNLPHAVTCDVKFKNYLIPKGTTIITSLTSVLHNDKEFPNPEMFDPGHFLDKSGNFKKSDY-FMPFSAGKRMCMGEGLARMELFLFLTTILQNFNLKSQVDPKDID 468          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP270_MOUSE1.657e-1431.07Cytochrome P450 2C70 OS=Mus musculus GN=Cyp2c70 PE... [more]
CP1A1_LIZAU1.657e-1428.49Cytochrome P450 1A1 OS=Liza aurata GN=cyp1a1 PE=2 ... [more]
CP3AT_PIG2.164e-1432.80Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2... [more]
CP2F2_RAT2.164e-1428.65Cytochrome P450 2F2 OS=Rattus norvegicus GN=Cyp2f2... [more]
CP2CB_RAT2.164e-1430.95Cytochrome P450 2C11 OS=Rattus norvegicus GN=Cyp2c... [more]
CP1A3_ONCMY2.164e-1427.42Cytochrome P450 1A3 OS=Oncorhynchus mykiss GN=cyp1... [more]
CP1A2_CALJA2.164e-1427.42Cytochrome P450 1A2 OS=Callithrix jacchus GN=CYP1A... [more]
CP2K1_ONCMY2.826e-1428.80Cytochrome P450 2K1 OS=Oncorhynchus mykiss GN=cyp2... [more]
CP2E1_RAT2.826e-1430.95Cytochrome P450 2E1 OS=Rattus norvegicus GN=Cyp2e1... [more]
CP2CI_HUMAN2.826e-1427.68Cytochrome P450 2C18 OS=Homo sapiens GN=CYP2C18 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
back to top