CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C90D2_ORYSJ (Cytochrome P450 90D2 OS=Oryza sativa subsp. japonica GN=CYP90D2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.826e-14
Identity = 47/135 (34.81%), Postives = 74/135 (54.81%), Query Frame = -1
Query:   25 TLEWAMAELLRSPDAYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENM 429
            TL+W     L    ++ Q V+ ETLRL   +  ++ RKA+ DVE+ G ++PKG  VFV   ++  D+  ++ P  F P R+   ++     N    PFG G+R+CPGL LA     + L  L+ SF W  E++++
Sbjct:  342 TLQWTDYMSL----SFTQHVITETLRLGNIIGGIM-RKAVRDVEVKGHLIPKGWCVFVYFRSVHLDDTLYDEPYKFNPWRWKEKDMS----NGSFTPFGGGQRLCPGLDLARLEASIFLHHLVTSFRWVAEEDHI 467          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP4S3_DROME (Probable cytochrome P450 4s3 OS=Drosophila melanogaster GN=Cyp4s3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 51/153 (33.33%), Postives = 75/153 (49.02%), Query Frame = -1
Query:   52 GTDTTSSTLEWAMAELLRSPDA--------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 450
            G DTTSS + +A++ L ++PD                     YL+AV+KETLR++P+VP    RK L D+E+    VPKGA +    + + RD   + +P  F P+RFL +        F    F +G R C G   A+  L   L  L+ S+
Sbjct:  308 GHDTTSSAIAFALSLLSKNPDVQQRAFEEASELEGREKESMPYLEAVIKETLRIYPSVPFF-SRKVLEDLEVGKLTVPKGASISCLIYMLHRDPKNFPDPERFDPDRFLVNEKQM--HPFAFAAFSAGPRNCIGQKFAMLELKTSLAMLLRSY 457          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP4P1_DROME (Cytochrome P450 4p1 OS=Drosophila melanogaster GN=Cyp4p1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 41/112 (36.61%), Postives = 70/112 (62.50%), Query Frame = -1
Query:   52 YLQAVVKETLRLHPAVPLLLPRKALADVEIA-GFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 384
            YL+  +KET RL P+VP++  R+A+ + E+A G I+PKGAQ+ ++ + I R+   W++P  F PERFL  N+  +   +  +PF +G+R C G   A++ +  ++  L+  F
Sbjct:  371 YLEYFMKETTRLFPSVPIM-GREAVQETELANGLILPKGAQITIHVFDIHRNAKYWDSPEEFRPERFLPENVQDR-HTYAYVPFSAGQRNCIGKKYAMQEMKTLMVVLLKQF 480          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP304_DROME (Probable cytochrome P450 304a1 OS=Drosophila melanogaster GN=Cyp304a1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = -1
Query:   40 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 384
            + +A ++E LR+   VP  +P KAL D E+ G+ +PK   V  + +A   D   W +P  F PERFL ++     +    +PFG+G+R+C G   A  ML L+  ++   FD+ L
Sbjct:  365 FTEATIREGLRIETLVPSDVPHKALEDTELLGYRIPKDTIVVPSLYAFHSDARIWSDPEQFRPERFLDADGKLCLKLDVSLPFGAGKRLCAGETFARNMLFLVTATMCQHFDFVL 479          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2H1_CHICK (Cytochrome P450 2H1 OS=Gallus gallus GN=CYP2H1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 52/177 (29.38%), Postives = 82/177 (46.33%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            DLF+AGT TTS+TL + +  LL+ P+                            Y  AV+ E  R    +PL +P   + D ++  + +PK   +F     I +D   + NP  F P  FL +N  F+ R+   +PF +G+RIC G  LA   + L L S++ +F  K   +  D++
Sbjct:  294 DLFLAGTGTTSTTLRYGLLILLKHPEIEEKMHKEIDRVVGRDRSPCMADRSQLPYTDAVIHEIQRFIDFLPLNVPHAVIKDTKLRDYFIPKDTMIFPLLSPILQDCKEFPNPEKFDPGHFLNANGTFR-RSDYFMPFSAGKRICAGEGLARMEIFLFLTSILQNFSLKPVKDRKDID 469          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2A4_MOUSE (Cytochrome P450 2A4 OS=Mus musculus GN=Cyp2a4 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 50/177 (28.25%), Postives = 81/177 (45.76%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            +LF AGT+T S+TL +    L++ PD                            Y +AV+ E  R    +P+ L R+   D +   F++PKG +VF    ++ +D   + NP  F P+ FL     FK ++   +PF  G+R C G  LA   L L L +++ +F +K      D++
Sbjct:  297 NLFFAGTETVSTTLRYGFLLLMKYPDIEAKVHEEIDRVIGRNRQPKYEDRMKMPYTEAVIHEIQRFADLIPMGLARRVTKDTKFRDFLLPKGTEVFPMLGSVLKDPKFFSNPKDFNPKHFLDDKGQFK-KSDAFVPFSIGKRYCFGEGLARMELFLFLTNIMQNFHFKSTQAPQDID 472          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_ORYLA (Cytochrome P450 1A1 OS=Oryzias latipes GN=cyp1a1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 52/185 (28.11%), Postives = 80/185 (43.24%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGR--NFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW-KLEDENMDMEEKFGI 465
            DLF AG DT S+ L WA+  L+  PD                               A + E  R    +P  +P     D  + G+ +PK   VF+N W I  D   W++P SF P+RFL  +     R    +++ FG G+R C G  +A   + L L  +I    + ++  E +DM  ++G+
Sbjct:  318 DLFGAGFDTISTALSWAVGYLVAYPDIEKGLFEEIKENIGLNRNPTISDRSNLPLTDAFILEIFRHSSFLPFTIPHCTTRDTSLNGYYIPKDTCVFINQWQINHDPKLWQDPSSFNPDRFLSEDGSEVNRLDGEKVMVFGLGKRRCIGEVIARNEVFLFLAIMIQKLCFEEMPGEPLDMTPEYGL 502          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_OPSTA (Cytochrome P450 1A1 OS=Opsanus tau GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 53/186 (28.49%), Postives = 84/186 (45.16%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPD---------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW-KLEDENMDMEEKFGI 465
            DLF AG DT S+ L W++  L+  P+                            +L A + E  R    +P  +P     +  + G+ +PK   VF+N W I  D   W++P SF PERFL   G+ L+ +    +++ FG G+R C G  +A   + L L  +I    +  L  E +DM  ++G+
Sbjct:  318 DLFGAGFDTVSTGLSWSVMYLVAYPEIQERLYQEIKDSVGTERMPLLSDRPSLPFLDAFILEIFRHSSFLPFTIPHCTTKNTSLNGYFIPKDTCVFINQWQINHDPELWKDPFSFNPERFLSADGTELN-RLEGEKVMLFGLGKRRCIGEVIARNEVFLFLAIIIQRLQFHMLPGEPLDMTPEYGL 502          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_LIZSA (Cytochrome P450 1A1 OS=Liza saliens GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 53/186 (28.49%), Postives = 84/186 (45.16%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPD---------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW-KLEDENMDMEEKFGI 465
            DLF AG DT S+ L W++  L+  P+                             L++ + E  R    +P  +P     D  + G+ +PK   VF+N W I  D   W+ P SF P+RFL   G+ ++ K    +++ FG G+R C G  +A   ++L L  LI    +  L  E +DM  ++G+
Sbjct:  318 DLFGAGFDTISTALSWSVMYLVAYPEIQEXLYQELKENVGLDRTPVLSDRNNLPLLESFILEIFRHSSFLPFTIPHCTTKDTSLNGYYIPKDTCVFINQWQINHDPELWKEPSSFNPDRFLSADGTEVN-KVDGEKVMIFGMGKRRCIGEVIARNEVYLFLAILIQKLHFCNLPGEPLDMTPEYGL 502          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C518A_DICDI (Probable cytochrome P450 518A1 OS=Dictyostelium discoideum GN=cyp518a1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.691e-14
Identity = 52/168 (30.95%), Postives = 81/168 (48.21%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPD----------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAG--FIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            +L +AGT+T SST EW +  ++ + D                                A +KE LRL+P VP  +PR+     EI G    +PKG Q+  + ++I RDE  W++P  F PERFL  + D    N+   P+G G + C G+  +   L++ L +L+ +F
Sbjct:  296 ELILAGTETNSSTAEWFILTMVNNLDYQDKIYNELKSTLETTTAMIKLSNRNQTPLFNAALKEVLRLYPPVPFGVPRQVNQSFEINGGSLKIPKGTQIIQSLYSIFRDENYWDSPDQFKPERFL--DQDSHSNNY--FPYGIGVKNCIGMGFSQDELYISLSNLVLNF 459          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
C90D2_ORYSJ2.826e-1434.81Cytochrome P450 90D2 OS=Oryza sativa subsp. japoni... [more]
CP4S3_DROME3.691e-1433.33Probable cytochrome P450 4s3 OS=Drosophila melanog... [more]
CP4P1_DROME3.691e-1436.61Cytochrome P450 4p1 OS=Drosophila melanogaster GN=... [more]
CP304_DROME3.691e-1434.78Probable cytochrome P450 304a1 OS=Drosophila melan... [more]
CP2H1_CHICK3.691e-1429.38Cytochrome P450 2H1 OS=Gallus gallus GN=CYP2H1 PE=... [more]
CP2A4_MOUSE3.691e-1428.25Cytochrome P450 2A4 OS=Mus musculus GN=Cyp2a4 PE=2... [more]
CP1A1_ORYLA3.691e-1428.11Cytochrome P450 1A1 OS=Oryzias latipes GN=cyp1a1 P... [more]
CP1A1_OPSTA3.691e-1428.49Cytochrome P450 1A1 OS=Opsanus tau GN=cyp1a1 PE=2 ... [more]
CP1A1_LIZSA3.691e-1428.49Cytochrome P450 1A1 OS=Liza saliens GN=cyp1a1 PE=2... [more]
C518A_DICDI3.691e-1430.95Probable cytochrome P450 518A1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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