CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CPXN_ANASP (Probable cytochrome P450 110 OS=Anabaena sp. (strain PCC 7120) GN=cyp110 PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 4.821e-14
Identity = 48/176 (27.27%), Postives = 89/176 (50.57%), Query Frame = -1
Query:   10 LFVAGTDTTSSTLEWAMAELLRSPDA------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL-EDENMDMEEK 462
            +  AG +TT++T+ WA  ++L++ +                         YL AV +ETLR++P +P L PR   + + IAG+ +     +  + + I   E  + NP  F PERF    ++ +    E IPFG G R C G  LA+  + L++ ++++++   L ED+ ++++ +
Sbjct:  258 ILFAGHETTATTIAWAFYQILKNVNVQEKLQQELDRLGANPNPMEIAQLPYLTAVSQETLRMYPVLPTLFPRITKSSINIAGYQLEPDTTLMASIYLIHYREDLYPNPQQFRPERF----IERQYSPSEYIPFGGGSRRCLGYALALLEIKLVIATVLSNYQLALAEDKPVNVQRR 429          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3AH_CAVPO (Cytochrome P450 3A17 OS=Cavia porcellus GN=CYP3A17 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.821e-14
Identity = 57/164 (34.76%), Postives = 76/164 (46.34%), Query Frame = -1
Query:   46 VAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW 456
            VAG +TTSSTL + M  L   PD                            YL  VV ETLRL+P V   + R +  D EI G   PKG  V + ++A+ RD   W  P  F PERF   N +     +  +PFG+G R C G+ +A+  L L L  L+ +F +
Sbjct:  304 VAGYETTSSTLCFIMYSLATHPDVQKKLQQEIDKTLPNKAFPTYDVMMEMEYLDMVVNETLRLYP-VTNRIERMSKKDFEINGMSFPKGTGVMIPSFALHRDSKYWPEPDEFRPERFSKKNKE-NIDPYIYMPFGNGPRNCIGMRMALMNLKLALIRLLQNFSF 465          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3AE_CAVPO (Cytochrome P450 3A14 OS=Cavia porcellus GN=CYP3A14 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.821e-14
Identity = 56/163 (34.36%), Postives = 75/163 (46.01%), Query Frame = -1
Query:   46 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW 453
            AG +TTSSTL + M  L   PD                            YL  VV ETLRL+P V   + R +  D EI G   PKG  V + ++A+ RD   W  P  F PERF   N +     +  +PFG+G R C G+ +A+  L L L  L+ +F +
Sbjct:  305 AGYETTSSTLSFIMYSLATHPDVQKKLQQEIDKTLPNKAFPTYDVMMEMEYLDMVVNETLRLYP-VTNRIERMSKKDFEINGMSFPKGTGVMIPSFALHRDSKYWPEPDEFRPERFSKKNKE-NIDPYIYMPFGNGPRNCIGMRMALMNLKLALIRLLQNFSF 465          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3AB_MOUSE (Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.821e-14
Identity = 53/166 (31.93%), Postives = 77/166 (46.39%), Query Frame = -1
Query:   43 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGR--NFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 453
            AG +TTSSTL + +  L   PD                            YL  V+ ETLRL+P +   L R    DVE+ G  +PKG+ V + ++A+  D   W  P  F PERF   N   KG    +  +PFG+G R C G+  A+  + L L  ++ +F ++
Sbjct:  306 AGYETTSSTLSFTLHSLATHPDIQKKLQDEIDEALPNKAPPTYDTVMEMEYLDMVLNETLRLYP-IANRLERVCKKDVELNGVYIPKGSTVMIPSYALHHDPQHWSEPEEFQPERFSKEN---KGSIDPYVYLPFGNGPRNCLGMRFALMNMKLALTKIMQNFSFQ 467          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2A7_HUMAN (Cytochrome P450 2A7 OS=Homo sapiens GN=CYP2A7 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.821e-14
Identity = 49/177 (27.68%), Postives = 80/177 (45.20%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            +LF+AGT+T S+TL +    L++ P+                            Y++AV+ E  R    +P+ L R+   D +   F +PKG +VF    ++ RD   + NP  F P+ FL     FK ++   +PF  G+R C G  LA   L L   +++ +F  K      D++
Sbjct:  297 NLFIAGTETVSTTLRYGFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRTKMPYMEAVIHEIQRFGDVIPMSLARRVKKDTKFRDFFLPKGTEVFPMLGSVLRDPSFFSNPQDFNPQHFLDDKGQFK-KSDAFVPFSIGKRNCFGEGLARMELFLFFTTVMQNFRLKSSQSPKDID 472          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A5_CHICK (Cytochrome P450 1A5 OS=Gallus gallus GN=CYP1A5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.821e-14
Identity = 49/186 (26.34%), Postives = 85/186 (45.70%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPD---------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED-ENMDMEEKFGI 465
            D+F AG DT ++ L W++  L+  P                             Y +A + E  R    +P  +P     D  + G+ +PK   VF+N W +  DE  W++P +F PERFL   G+ ++ K    +++ FG G+R C G  +    + L L +L+   ++ ++D +  DM   +G+
Sbjct:  322 DIFGAGFDTVTTALSWSLMYLVTYPHMQKKIQAELDQTIGRERRPRLSDRGMLPYTEAFILEMFRHSSFMPFTIPHSTTRDTVLNGYYIPKDRCVFINQWQVNHDEKLWKDPQAFNPERFLNAEGTEVN-KVDAEKVMTFGLGKRRCIGENIGKWEVFLFLSTLLQQLEFSIQDGKKADMTPIYGL 506          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_CAVPO (Cytochrome P450 1A1 OS=Cavia porcellus GN=CYP1A1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.821e-14
Identity = 50/185 (27.03%), Postives = 80/185 (43.24%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLG--SNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLE-DENMDMEEKFGI 465
            DLF AG DT ++ + W++  L+ +P                             Y++A + E  R    +P  +P     D  + GF +PKG  +FVN W I  D+  W +P  F PERFL     +D K  + ++  FG G+R C G  +    + L L  L+   ++       +DM   +G+
Sbjct:  309 DLFGAGFDTITTAISWSLLYLVMNPRIQKKIQEELDTVIGRERQPQLADRPKLPYMEAFISEVFRYSSFMPFTIPHSTTKDTSLNGFYIPKGCCIFVNQWQINHDQKLWGDPSVFRPERFLSPDGTVD-KALSEKVTIFGLGKRRCLGEVIGRWEVFLFLAILLQQLEFSTSPGVKIDMTPIYGL 492          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3AV_MESAU (Cytochrome P450 3A31 OS=Mesocricetus auratus GN=CYP3A31 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 61/181 (33.70%), Postives = 81/181 (44.75%), Query Frame = -1
Query:   52 LHKFQVI*QGFI*QDLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGR--NFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 507
            L   ++I Q  I      AG DTTSSTL +A+  L   PD                            YL  V+ ETLRL+P +   L R    DVE+ G  VPKG+ V V  +A+  D   W  P  F PERF   N   KG    +  +PFG+G R C G+  A+  + L L  ++ +F
Sbjct:  288 LSDMEIIAQSII---FIFAGYDTTSSTLSFALYLLATHPDVQKKLQEEIDIALPNKARPSYDKVMEMEYLDMVLNETLRLYP-IGSRLERVCKQDVEMDGVFVPKGSIVMVPVFALHYDPQYWPEPEKFRPERFSKEN---KGSIDPYIFLPFGNGPRNCIGMRFALMNMKLALTKVLQNF 461          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3AO_SHEEP (Cytochrome P450 3A24 OS=Ovis aries GN=CYP3A24 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 54/164 (32.93%), Postives = 74/164 (45.12%), Query Frame = -1
Query:   43 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 453
            AG +TTS+TL + +  L   PD                            YL  VV ETLR+ P + + L R    DVEI G  +PKG  V V  + + RD   W  P  F PERF   N D     +  +PFG+G R C G+  AI  + L +  ++ +F +K
Sbjct:  305 AGYETTSNTLSFLLYILATHPDVQQKLQEEIDATFPNKAPPTYDVLAQMEYLDMVVNETLRMFP-IAVRLDRLCKKDVEIHGVSIPKGTAVTVPIFVLHRDPQLWPEPEEFRPERFSKKNKD-SINPYVYLPFGTGPRNCIGMRFAIMNMKLAIVRVLQNFSFK 466          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3A5_HUMAN (Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 55/164 (33.54%), Postives = 73/164 (44.51%), Query Frame = -1
Query:   43 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 453
            AG +TTSS L + + EL   PD                            YL  VV ETLRL P V + L R    DVEI G  +PKG+ V +  +A+  D   W  P  F PERF  S        +   PFG+G R C G+  A+  + L L  ++ +F +K
Sbjct:  305 AGYETTSSVLSFTLYELATHPDVQQKLQKEIDAVLPNKAPPTYDAVVQMEYLDMVVNETLRLFP-VAIRLERTCKKDVEINGVFIPKGSMVVIPTYALHHDPKYWTEPEEFRPERF--SKKKDSIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSFK 465          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CPXN_ANASP4.821e-1427.27Probable cytochrome P450 110 OS=Anabaena sp. (stra... [more]
CP3AH_CAVPO4.821e-1434.76Cytochrome P450 3A17 OS=Cavia porcellus GN=CYP3A17... [more]
CP3AE_CAVPO4.821e-1434.36Cytochrome P450 3A14 OS=Cavia porcellus GN=CYP3A14... [more]
CP3AB_MOUSE4.821e-1431.93Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE... [more]
CP2A7_HUMAN4.821e-1427.68Cytochrome P450 2A7 OS=Homo sapiens GN=CYP2A7 PE=2... [more]
CP1A5_CHICK4.821e-1426.34Cytochrome P450 1A5 OS=Gallus gallus GN=CYP1A5 PE=... [more]
CP1A1_CAVPO4.821e-1427.03Cytochrome P450 1A1 OS=Cavia porcellus GN=CYP1A1 P... [more]
CP3AV_MESAU6.296e-1433.70Cytochrome P450 3A31 OS=Mesocricetus auratus GN=CY... [more]
CP3AO_SHEEP6.296e-1432.93Cytochrome P450 3A24 OS=Ovis aries GN=CYP3A24 PE=2... [more]
CP3A5_HUMAN6.296e-1433.54Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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