CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2E1_MESAU (Cytochrome P450 2E1 OS=Mesocricetus auratus GN=CYP2E1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 51/168 (30.36%), Postives = 77/168 (45.83%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AGT+TTS+TL + +  L++ P+                            Y+ AVV E  R    +P  LP +A  D    G+++PKG  V     ++  D   + +P  F PE FL  N  FK  +     F +G+R+C G  LA   L L+L +++  F+ K
Sbjct:  295 DLFFAGTETTSTTLRYGLLILMKYPEVEEKLHEEIDRVIGPSRVPVFKDRLEMPYMDAVVHEIQRFISLIPSNLPHEATRDTMFRGYVIPKGTVVIPTLDSLLYDSQEFPDPEKFKPEHFLNENGKFKYSD-HFKAFSAGKRVCVGEGLARMELFLLLTAILQHFNLK 461          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP242_PIG (Cytochrome P450 2C42 (Fragment) OS=Sus scrofa GN=CYP2C42 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 50/177 (28.25%), Postives = 82/177 (46.33%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            D+F AGT+TTS+T+ + +  LL+ P+                            Y  AVV E  R    VP  LP     D++   +++PKG  +  +  ++  D   + NP  F P  FL  + +FK  ++  +PF +G+RIC G  LA   L L L +++  F+ K   +  D++
Sbjct:  130 DMFSAGTETTSTTMRYGLLLLLKHPEVTAKVQEEIDRVIGRHRSACMQDRSHMPYTDAVVHEIQRYIDLVPTNLPHAVTCDIKFRNYLIPKGTTILTSLTSVLYDCKAFPNPEVFDPGHFLDESGNFKKSDY-FMPFSTGKRICVGEGLARMELFLFLTTILQKFNLKSVVDPKDID 305          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A2_CAVPO (Cytochrome P450 1A2 OS=Cavia porcellus GN=CYP1A2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 47/172 (27.33%), Postives = 77/172 (44.77%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPD---------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSN---LDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            D+F AG DT ++ + W++  L+  P+                            Y++A + E  R    +P  +P     D  + GF +PK   VF+N W +  D   WE+P  F PERFL +N   +D K  + +++ FG G+R C G  L    + L L  L+   ++ +
Sbjct:  313 DIFGAGFDTVTTAISWSLLYLVTKPEIQKKIHKELDAVIGRDRKPRLADRPQLPYMEAFILEVFRYSSFLPFTIPHCTTRDTILNGFYIPKDRCVFINQWQVNHDPKQWEDPFEFRPERFLLANNTAVD-KTLSDKILLFGLGKRRCIGETLGRWEVFLFLAILLQQLEFSV 483          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_MICTO (Cytochrome P450 1A1 OS=Microgadus tomcod GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 51/185 (27.57%), Postives = 82/185 (44.32%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDAY---------------------------LQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLD--FKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW-KLEDENMDMEEKFGI 465
            DLF AG DT S+ L W++  L+  P+                             L+A + E  R    +P  +P  A  D  + G+ +PK   VF+N W I  D   W+ P +F P+RFL ++     K    +++ FG G+R C G  +A   + L L  L+    +  +  E +DM  ++G+
Sbjct:  314 DLFGAGFDTVSTALSWSVMYLVAHPEIQERLHQEIKDKVGLSRSPVLTDRHNLPILEAFIFEIFRHSSFLPFTIPHCATKDTSLDGYFIPKDTCVFINQWQINHDPELWKEPSTFNPDRFLSADASELNKLAGEKVMLFGMGKRRCIGEMVARNEVFLFLAILVQRLTFHAVPGEPLDMTPEYGL 498          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2A3_RAT (Cytochrome P450 2A3 OS=Rattus norvegicus GN=Cyp2a3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.223e-14
Identity = 50/177 (28.25%), Postives = 81/177 (45.76%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            +LF AGT+T S+TL +    L++ PD                            Y +AV+ E  R    +P+ L R+   D +   F++PKG +VF    ++ +D   + NP  F P+ FL     FK ++   +PF  G+R C G  LA   L L L +++ +F +K      D++
Sbjct:  297 NLFFAGTETVSTTLRYGFLLLMKHPDIEAKVHEEIDRVIGRNRQAKYEDRMKMPYTEAVIHEIQRFADMIPMGLARRVTKDTKFREFLLPKGTEVFPMLGSVLKDPKFFSNPNDFNPKHFLDDKGQFK-KSDAFVPFSIGKRYCFGEGLARMELFLFLTNIMQNFCFKSPQAPQDID 472          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3AD_MOUSE (Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.074e-13
Identity = 54/161 (33.54%), Postives = 73/161 (45.34%), Query Frame = -1
Query:   52 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 453
            AG +TTSS L +A+  L   PD                            YL  VV ETLRL+P +   L R    DVEI G  +PKG  V +  +A+ +D   W  P  F PERF   N D     +  +PFGSG R C G+  A+  + + L  ++ +F
Sbjct:  305 AGYETTSSALSFALYLLAIHPDVQKKLQDEIDAALPNKAPATYDTLLQMEYLDMVVNETLRLYP-IAGRLERVCKTDVEINGLFIPKGTVVMIPTFALHKDPKYWPEPEEFRPERFSKKNQD-SINPYMYLPFGSGPRNCIGMRFALINMKVALVRVLQNF 463          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3A1_RAT (Cytochrome P450 3A1 OS=Rattus norvegicus GN=Cyp3a1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.074e-13
Identity = 54/166 (32.53%), Postives = 77/166 (46.39%), Query Frame = -1
Query:   43 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGR--NFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 453
            AG + TSSTL + +  L   PD                            YL  V+ ETLRL+P +   L R    DVEI G  +PKG+ V + ++A+ RD   W  P  F PERF   N   KG    +  +PFG+G R C G+  A+  + L L  ++ +F ++
Sbjct:  306 AGYEPTSSTLSFVLHSLATHPDTQKKLQEEIDRALPNKAPPTYDTVMEMEYLDMVLNETLRLYP-IGNRLERVCKKDVEINGVFMPKGSVVMIPSYALHRDPQHWPEPEEFRPERFSKEN---KGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSFQ 467          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP255_RAT (Cytochrome P450 2C55 OS=Rattus norvegicus GN=Cyp2c55 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.074e-13
Identity = 48/177 (27.12%), Postives = 85/177 (48.02%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            D+FVAG++TTS+TL + +  LL+  +                            Y  A+V E  R    +P  +P  A  +V    +++PKG  +  +  ++  D+  + NP  F P  FL  N +FK  ++  +PF +G+R+C G  LA   L L+L +++ +F+ K   +  D++
Sbjct:  293 DVFVAGSETTSTTLRYGLLLLLKHTEVTAKVQEEIDHVIGRHRRPCMQDRTRMPYTDAMVHEIQRYINLIPNNVPHAATCNVRFRNYVIPKGTDLVTSLTSVLHDDKEFPNPEVFDPGHFLDENGNFKKSDY-FMPFSTGKRMCVGEALARMELFLLLTTIVQNFNLKSFVDTKDID 468          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A2_MACFA (Cytochrome P450 1A2 OS=Macaca fascicularis GN=CYP1A2 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.074e-13
Identity = 47/172 (27.33%), Postives = 77/172 (44.77%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPD---------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            D+F AG DT ++ + W++  L+  P+                            YL+A + ET R    VP  +P     D  + GF +P+   VF+N W +  D   W +P  F PERFL   G+ ++ K  + +++ FG G+R C G  L    + L L  L+   ++ +
Sbjct:  313 DIFGAGFDTIATAISWSLMYLVTKPEIQRKIQKELDAVIGRGRRPRLSDRPQLPYLEAFILETFRHSSFVPFTIPHSTTRDTTLNGFYIPRECCVFINQWQVNHDPQLWGDPSEFRPERFLTAEGTTIN-KPLSEKIMLFGLGKRRCIGEVLGKWEVFLFLAILLQQLEFSV 483          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A2_CANFA (Cytochrome P450 1A2 OS=Canis familiaris GN=CYP1A2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.074e-13
Identity = 46/172 (26.74%), Postives = 79/172 (45.93%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPD---------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            D+F AG DT ++ + W++  L+ +P+                             ++A + E  R    VP  +P     D  + GF +PK   VF+N W +  D+  W +P +F PERFL   G+ ++ K  + +++ FG G+R C G  LA   + L L  L+   ++ +
Sbjct:  309 DIFGAGFDTVTTAISWSLMYLVANPEIQRQIQKELDTVIGRARQPRLSDRPQLPLMEAFILEIFRHTSFVPFTIPHSTTKDTTLKGFYIPKECCVFINQWQVNHDQQVWGDPFAFRPERFLTADGTTIN-KTLSEKVMLFGMGKRRCIGEVLAKWEIFLFLAILLQRLEFSV 479          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP2E1_MESAU6.296e-1430.36Cytochrome P450 2E1 OS=Mesocricetus auratus GN=CYP... [more]
CP242_PIG6.296e-1428.25Cytochrome P450 2C42 (Fragment) OS=Sus scrofa GN=C... [more]
CP1A2_CAVPO6.296e-1427.33Cytochrome P450 1A2 OS=Cavia porcellus GN=CYP1A2 P... [more]
CP1A1_MICTO6.296e-1427.57Cytochrome P450 1A1 OS=Microgadus tomcod GN=cyp1a1... [more]
CP2A3_RAT8.223e-1428.25Cytochrome P450 2A3 OS=Rattus norvegicus GN=Cyp2a3... [more]
CP3AD_MOUSE1.074e-1333.54Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE... [more]
CP3A1_RAT1.074e-1332.53Cytochrome P450 3A1 OS=Rattus norvegicus GN=Cyp3a1... [more]
CP255_RAT1.074e-1327.12Cytochrome P450 2C55 OS=Rattus norvegicus GN=Cyp2c... [more]
CP1A2_MACFA1.074e-1327.33Cytochrome P450 1A2 OS=Macaca fascicularis GN=CYP1... [more]
CP1A2_CANFA1.074e-1326.74Cytochrome P450 1A2 OS=Canis familiaris GN=CYP1A2 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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