CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP305_DROME (Probable cytochrome P450 305a1 OS=Drosophila melanogaster GN=Cyp305a1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 50/169 (29.59%), Postives = 76/169 (44.97%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPDA------------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGS-NLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            D F+AG+ TTS+T+  A+  L   PD                               Y+ A + E  R     P+  PR+AL   ++ G+ +PK A + ++  ++  D+  W++PL F PERF+ S    FK   F  +PFG GRR C G  LA   +   L  ++  F
Sbjct:  305 DFFIAGSQTTSNTINLALMVLAMRPDVQEKLFSQVTASVAAASTDAFPHLSRREAFDYMDAFIMEVQRFFHITPITGPRRALWATKLGGYDIPKNATILISLRSVHLDKEHWKDPLEFRPERFIDSAGKCFKDEYF--MPFGMGRRRCLGDALARACIFSFLVRIVQHF 471          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2G1_RABIT (Cytochrome P450 2G1 OS=Oryctolagus cuniculus GN=CYP2G1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 48/165 (29.09%), Postives = 76/165 (46.06%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            +LF AGT+T SSTL +    +++ P+                            +  AV+ E  RL   VP+ +P   + D    G+++PKG  VF    ++ +D   + +P  F P+ FL     FK +N   +PF SG+RIC G  +A   L L   S++ +F
Sbjct:  297 NLFFAGTETVSSTLRYGFLLIMKHPEVQTKIYEEINQVIGPHRIPSVDDRVKMPFTDAVIHEIQRLTDIVPMGVPHNVIRDTHFRGYLLPKGTDVFPLLGSVLKDPKYFCHPDDFYPQHFLDEQGRFK-KNEAFVPFSSGKRICLGEAMARMELFLYFTSILQNF 460          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2E1_CANFA (Cytochrome P450 2E1 OS=Canis familiaris GN=CYP2E1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 51/168 (30.36%), Postives = 77/168 (45.83%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AGT+TTS+TL + +  L++ P+                            Y+ AVV E  R    +P  LP  A  D    G+++PKG  V     ++  D+  + +P  F PE FL  N  FK  ++    F +G+R+C G  LA   L L L +++  F+ K
Sbjct:  295 DLFFAGTETTSTTLRYGLLILMKYPEVEEKLHEEIDRVIGPSRVPAIKDRLEMPYMDAVVHEIQRFIDLLPSNLPHVANQDTMFRGYVIPKGTVVIPTLDSVLFDKQEFPDPEKFKPEHFLNENGKFKYSDY-FKAFSAGKRVCVGEGLARMELFLFLSAILQHFNLK 461          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2C7_RAT (Cytochrome P450 2C7 OS=Rattus norvegicus GN=Cyp2c7 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 48/168 (28.57%), Postives = 77/168 (45.83%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DL  AGT+T S+TL +A+  L++ P                             Y  A++ E  R    VP  LP     D++   +++PKG +V  +  ++  D   + NP  F P  FL  N +FK  ++  +PF +G+R C G  LA   L L L +++ +F+ K
Sbjct:  293 DLIGAGTETMSTTLRYALLLLMKYPHVTAKVQEEIDRVIGRHRSPCMQDRKHMPYTDAMIHEVQRFINFVPTNLPHAVTCDIKFRNYLIPKGTKVLTSLTSVLHDSKEFPNPEMFDPGHFLDENGNFKKSDY-FLPFSAGKRACVGEGLARMQLFLFLTTILQNFNLK 459          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1B1_MOUSE (Cytochrome P450 1B1 OS=Mus musculus GN=Cyp1b1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 49/184 (26.63%), Postives = 81/184 (44.02%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSN-LDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL-EDENMDMEEKFGI 465
            D+F A  DT S+ L W +    R PD                            Y+ A + E++R    +P+ +P    A+  + G+ +PK   VFVN W++  D   W NP  F P RFL  +    K     ++ F  G+R C G  L+  +L L +  L +  ++K  ++E+ +M   +G+
Sbjct:  326 DIFGASQDTLSTALLWLLILFTRYPDVQARVQAELDQVVGRDRLPCMSDQPNLPYVMAFLYESMRFSSFLPVTIPHATTANTFVLGYYIPKNTVVFVNQWSVNHDPAKWPNPEDFDPARFLDKDGFINKALASSVMIFSVGKRRCIGEELSKMLLFLFISILAHQCNFKANQNESSNMSFSYGL 509          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C513E_DICDI (Probable cytochrome P450 513E1 OS=Dictyostelium discoideum GN=cyp513e1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = -1
Query:   46 LLRSPDAYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL--GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW 405
            L RS   YL  V+KE  RL+  + + LP     DVEI G+ + KG Q+  N ++    E T+    SF+PERF+  GSN  F G    L+ FG+G R C G  LA   +  +L +LIN + +
Sbjct:  352 LYRSSIPYLSLVMKEVYRLYSVILIGLPHITSEDVEIEGYKIAKGTQIIQNVFSTHLCEKTFPMSKSFIPERFIETGSNNMFGGGQTNLVHFGTGVRDCVGKSLADCEIFTVLATLINRYQF 473          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP4V2_HUMAN (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.832e-13
Identity = 50/162 (30.86%), Postives = 76/162 (46.91%), Query Frame = -1
Query:   52 GTDTTSSTLEWAMAELLRSPDA----------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRN-FELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 450
            G DTT++ + W++  L  +P+                             YL+ V+KETLRL P+VPL   R    D E+AG+ V KG +  +  +A+ RD   + NP  F PERF   N   +GR+ +  +PF +G R C G   A+     +L  ++  F
Sbjct:  330 GHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFA-RSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERFFPENA--QGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHF 488          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2E1_PIG (Cytochrome P450 2E1 OS=Sus scrofa GN=CYP2E1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.832e-13
Identity = 50/168 (29.76%), Postives = 75/168 (44.64%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            D+F AGT+TTS+TL + +  L++ P+                            YL AVV E  R    +P  LP +A  D +   +I+PKG  V     ++  D   +  P  F PE FL  N  FK  +     F +G+R+C G  LA   L L + +++  F+ K
Sbjct:  295 DMFFAGTETTSTTLRYGLLILMKYPEVEEKLHEEIDRVIGPNRIPAIKDRLVMPYLDAVVHEIQRFIDLIPSNLPHEATRDTDFRDYIIPKGTVVIPTLDSVLYDSQEFPEPEKFKPEHFLNENGKFKYSD-HFKAFSAGKRVCVGEGLARMELFLFMAAILQHFNLK 461          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP241_CANFA (Cytochrome P450 2C41 OS=Canis familiaris GN=CYP2C41 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.832e-13
Identity = 50/168 (29.76%), Postives = 77/168 (45.83%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AGT+TTS+TL + +  LL+ P+                            Y  AV+ E  R    VP  LP     DV+   +++PKG  + ++  ++  DE  +  P  F P  FL  + +FK  ++  + F +G+RIC G  LA   L L L +++  F  K
Sbjct:  292 DLFGAGTETTSTTLRYGLLLLLKHPEVTVKVQEEIDRVIGRHQSPHMQDRSRMPYTNAVLHEIQRYIDLVPNSLPHAVTCDVKFRNYVIPKGTTILISLSSVLSDEKEFPRPEIFDPAHFLDDSGNFKKSDY-FMAFSAGKRICVGEGLARMELFLFLTTILQKFTLK 458          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1B1_RAT (Cytochrome P450 1B1 OS=Rattus norvegicus GN=Cyp1b1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.832e-13
Identity = 50/184 (27.17%), Postives = 80/184 (43.48%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSN-LDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL-EDENMDMEEKFGI 465
            D+F A  DT S+ L W +    R PD                            Y+ A + E++R    +P+ LP    A+  + G+ +PK   VFVN W++  D   W NP  F P RFL  +    K     ++ F  G+R C G  L+  +L L +  L +  ++K  ++E  +M   +G+
Sbjct:  326 DIFGASQDTLSTALLWLLILFTRYPDVQARVQAELDQVVGRDRLPCMSDQPNLPYVMAFLYESMRFTSFLPVTLPHATTANTFVLGYYIPKNTVVFVNQWSVNHDPAKWSNPEDFDPARFLDKDGFINKALASSVMIFSVGKRRCIGEELSKTLLFLFISILAHQCNFKANQNEPSNMSFSYGL 509          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP305_DROME1.403e-1329.59Probable cytochrome P450 305a1 OS=Drosophila melan... [more]
CP2G1_RABIT1.403e-1329.09Cytochrome P450 2G1 OS=Oryctolagus cuniculus GN=CY... [more]
CP2E1_CANFA1.403e-1330.36Cytochrome P450 2E1 OS=Canis familiaris GN=CYP2E1 ... [more]
CP2C7_RAT1.403e-1328.57Cytochrome P450 2C7 OS=Rattus norvegicus GN=Cyp2c7... [more]
CP1B1_MOUSE1.403e-1326.63Cytochrome P450 1B1 OS=Mus musculus GN=Cyp1b1 PE=2... [more]
C513E_DICDI1.403e-1338.52Probable cytochrome P450 513E1 OS=Dictyostelium di... [more]
CP4V2_HUMAN1.832e-1330.86Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1... [more]
CP2E1_PIG1.832e-1329.76Cytochrome P450 2E1 OS=Sus scrofa GN=CYP2E1 PE=2 S... [more]
CP241_CANFA1.832e-1329.76Cytochrome P450 2C41 OS=Canis familiaris GN=CYP2C4... [more]
CP1B1_RAT1.832e-1327.17Cytochrome P450 1B1 OS=Rattus norvegicus GN=Cyp1b1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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