CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A1_ONCMY (Cytochrome P450 1A1 OS=Oncorhynchus mykiss GN=cyp1a1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.832e-13
Identity = 50/186 (26.88%), Postives = 84/186 (45.16%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDAY---------------------------LQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDEN-MDMEEKFGI 465
            DLF AG DT S+ L WA+  L+  P+                             L+A + E  R    +P  +P   + D  + G+ +PK   VF+N W +  D   W+ P SF P+RFL   G+ L+ K    +++ FG  +R C G  +    ++L L  L+    ++ +  + +DM  ++G+
Sbjct:  318 DLFGAGFDTISTALSWAVVYLVAYPEIQERLHQELKEKVGMIRTPRLSDKINLPLLEAFILEIFRHSSFLPFTIPHCTIKDTSLNGYFIPKDTCVFINQWQVNHDPELWKEPSSFNPDRFLSADGTELN-KLEGEKVLVFGMDKRRCIGEAIGRNEVYLFLAILLQRLRFQEKPGHPLDMTPEYGL 502          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP10_LYMST (Cytochrome P450 10 OS=Lymnaea stagnalis GN=CYP10 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.832e-13
Identity = 48/179 (26.82%), Postives = 82/179 (45.81%), Query Frame = -1
Query:   22 DLFVAGTDTTSSTLEWAMAELLRSPDAY----------------------------LQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMD 465
            DL +A  +TTSS   W +  L ++P                               ++AVVKETLRL+P +     R    D+E+ G+ +P G  V  N + + RD   +  P   +PER+L   GS +D   ++   + +G G R+C G  +A + +H+ L  +I +F      ++++
Sbjct:  347 DLMLAAVETTSSATVWCLYNLAKNPQVQEKLFQEITEAQAKNNGTISAEDLCKLPMVKAVVKETLRLYP-ITYSTSRNIAEDMELGGYTIPAGTHVQANLYGMYRDPSLFPEPEGILPERWLRMNGSQMDATIKSTSQLVWGHGARMCLGRRIAEQEMHITLSKIIQNFTLSYNHDDVE 524          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C5084_DICDI (Probable cytochrome P450 508A4 OS=Dictyostelium discoideum GN=cyp508a4 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.832e-13
Identity = 57/194 (29.38%), Postives = 87/194 (44.85%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPD-----------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEI-AGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL-------GSNLDFK-GRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK-LEDENMDMEEKFGI 465
            D F AGTDT+S+TLE+    +   P+                              Y+ AV+KETLR  P  P  +PR  + ++ I   + +PKGAQV +N  +I  +E  ++N   F P RFL        SN +     N   IPF  G R C G+  A   L L   +++ +F  K ++ + +D    +G+
Sbjct:  291 DFFFAGTDTSSTTLEYLFLMMANYPEIQDKVHQEVKSYLKQIGKDKVELNDRQSLPYVVAVIKETLRFKPVTPFGVPRSCVNEITIDEKYFIPKGAQVIINYPSIFENEKYFKNANQFDPSRFLQTTTTNTASNEESSFNSNLAFIPFSIGPRNCVGMQFAQDELFLAFANIVLNFTIKSVDGKKIDETISYGV 484          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP4P3_DROME (Probable cytochrome P450 4p3 OS=Drosophila melanogaster GN=Cyp4p3 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.393e-13
Identity = 40/111 (36.04%), Postives = 68/111 (61.26%), Query Frame = -1
Query:   52 LQAVVKETLRLHPAVPLLLPRKALADVEIA-GFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 381
            L+  +KET+RL P+VP +  R+   + E++ G I+PKG+Q+FV+ + I R+   W++P  F PERFL  N   +   +  IPF +G+R C G   A++ +  ++ +L+  F
Sbjct:  374 LEYFIKETMRLFPSVPAM-GRETTRETELSNGLILPKGSQIFVHVFDIHRNPEYWDSPEEFRPERFLPENSQNR-HTYAYIPFSAGQRNCIGQKFAMQEMKTLMVALLKQF 482          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2G1_RAT (Cytochrome P450 2G1 OS=Rattus norvegicus GN=Cyp2g1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.393e-13
Identity = 50/165 (30.30%), Postives = 73/165 (44.24%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            +LF AGT+T SSTL +    L++ P+                            Y  AV+ E  RL   VPL +P   + D    G+ +PKG  V+    ++ +D   +  P +F P+ FL     FK +N   + F SG+RIC G  LA   L L   S++  F
Sbjct:  297 NLFFAGTETVSSTLRYGFLLLMKYPEVEAKIHEEINQVIGTHRTPRVDDRAKMPYTDAVIHEIQRLTDIVPLGVPHNVIRDTHFRGYFLPKGTDVYPLIGSVLKDPKYFRYPEAFYPQHFLDEQGRFK-KNDAFVAFSSGKRICVGEALARMELFLYFTSILQRF 460          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2A6_HUMAN (Cytochrome P450 2A6 OS=Homo sapiens GN=CYP2A6 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.393e-13
Identity = 47/177 (26.55%), Postives = 79/177 (44.63%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            +LF+ GT+T S+TL +    L++ P+                            Y++AV+ E  R    +P+ L R+   D +   F +PKG +V+    ++ RD   + NP  F P+ FL     FK ++   +PF  G+R C G  LA   L L   +++ +F  K      D++
Sbjct:  297 NLFIGGTETVSTTLRYGFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPMSLARRVKKDTKFRDFFLPKGTEVYPMLGSVLRDPSFFSNPQDFNPQHFLNEKGQFK-KSDAFVPFSIGKRNCFGEGLARMELFLFFTTVMQNFRLKSSQSPKDID 472          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A2_MOUSE (Cytochrome P450 1A2 OS=Mus musculus GN=Cyp1a2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.393e-13
Identity = 49/186 (26.34%), Postives = 85/186 (45.70%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSN---LDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL-EDENMDMEEKFGI 465
            D+F AG DT ++ + W++  L+  P+                            YL+A + E  R    VP  +P     D  + GF +PK   +++N W +  DE  W++P  F PERFL +N   +D K ++ +++ FG G+R C G   A   + L L  L+   ++ +     +D+   +G+
Sbjct:  311 DIFGAGFDTVTTAITWSILLLVTWPNVQRKIHEELDTVVGRDRQPRLSDRPQLPYLEAFILEIYRYTSFVPFTIPHSTTRDTSLNGFHIPKERCIYINQWQVNHDEKQWKDPFVFRPERFLTNNNSAID-KTQSEKVMLFGLGKRRCIGEIPAKWEVFLFLAILLQHLEFSVPPGVKVDLTPNYGL 495          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C515B_DICDI (Probable cytochrome P450 515B1 OS=Dictyostelium discoideum GN=cyp515b1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.393e-13
Identity = 54/194 (27.84%), Postives = 83/194 (42.78%), Query Frame = -1
Query:   13 FI*QDLFVAGTDTTSSTLEWAMA--------------ELLRSPDA-------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDMEE 477
            +I  DL V GTD+TSS LEW +               E+ ++ +                             A VKETLR  P VPL LP     D EI G+++PKG Q+  N ++    +  + +PL F P RF+ ++        + + F +G R+CPG  L+   L      L  +F +   ++N   +E
Sbjct:  285 YIVLDLLVGGTDSTSSALEWMILFLSNHESIQEKLYNEICKNTNTNTTATTTENDNESYFPKLIEKNNYPLFNACVKETLRRSPPVPLGLPHLCSEDTEIGGYLIPKGTQIISNIYSASNCDKVFTDPLEFNPLRFIENSPP------QTVTFSTGPRVCPGKNLSEDELFSFGTKLFKTFKFSRPNKNQLYDE 472          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C513D_DICDI (Probable cytochrome P450 513D1 OS=Dictyostelium discoideum GN=cyp513d1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.393e-13
Identity = 50/152 (32.89%), Postives = 81/152 (53.29%), Query Frame = -1
Query:    1 DTTSSTLEWA-MAELLRSPDAYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLE-DENMDMEEK--FGI 444
            D ++S L+ +  ++ +++P  YL A +KE  R +P  PL +P     D EI G+ + KG QV  N ++    +    NPL F PERFL S  + K     +I FG G+R CPG  +    +++ L  LI  F +    D+N+ + ++  FG+
Sbjct:  361 DISNSLLKLSYFSDRIKTP--YLVAFIKEVKRYYPCAPLSVPHLLTEDCEIQGYKIAKGTQVIQNIYSTHLSQSFCSNPLEFSPERFLDSTNEPK-----IITFGIGQRKCPGENIFEIEIYIFLVYLIKKFKFSHPIDDNLQLNDRGQFGL 505          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C513C_DICDI (Probable cytochrome P450 513C1 OS=Dictyostelium discoideum GN=cyp513c1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.393e-13
Identity = 48/167 (28.74%), Postives = 74/167 (44.31%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPDA-----------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            D+ +AGTDT   TL +A+  L+ + +                              YL  VVKE  R++PA  L LP     D EI G  + KG Q+  N ++  R E  W NP +F+PER + +++       + + F  G R C G+ L+   +H  +  L  +F
Sbjct:  302 DVLIAGTDTVGQTLSFAIVALVNNAEIQEKLSRNIIDSMEKGDNHYSYSKYRNGIPYLALVVKEVFRMYPAGILGLPHMTSEDCEIQGHKIAKGTQIIQNIYSTHRSESFWPNPNNFIPERHIQNDVS------KSVHFAVGTRNCMGMSLSEAEVHTAMAELFGNF 462          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP1A1_ONCMY1.832e-1326.88Cytochrome P450 1A1 OS=Oncorhynchus mykiss GN=cyp1... [more]
CP10_LYMST1.832e-1326.82Cytochrome P450 10 OS=Lymnaea stagnalis GN=CYP10 P... [more]
C5084_DICDI1.832e-1329.38Probable cytochrome P450 508A4 OS=Dictyostelium di... [more]
CP4P3_DROME2.393e-1336.04Probable cytochrome P450 4p3 OS=Drosophila melanog... [more]
CP2G1_RAT2.393e-1330.30Cytochrome P450 2G1 OS=Rattus norvegicus GN=Cyp2g1... [more]
CP2A6_HUMAN2.393e-1326.55Cytochrome P450 2A6 OS=Homo sapiens GN=CYP2A6 PE=1... [more]
CP1A2_MOUSE2.393e-1326.34Cytochrome P450 1A2 OS=Mus musculus GN=Cyp1a2 PE=1... [more]
C515B_DICDI2.393e-1327.84Probable cytochrome P450 515B1 OS=Dictyostelium di... [more]
C513D_DICDI2.393e-1332.89Probable cytochrome P450 513D1 OS=Dictyostelium di... [more]
C513C_DICDI2.393e-1328.74Probable cytochrome P450 513C1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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