CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP4V2_PONAB (Cytochrome P450 4V2 OS=Pongo abelii GN=CYP4V2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 50/162 (30.86%), Postives = 76/162 (46.91%), Query Frame = -1
Query:   52 GTDTTSSTLEWAMAELLRSPDA----------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRN-FELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 450
            G DTT++ + W++  L  +P+                             YL+ V+KETLRL P+VPL   R    D E+AG+ V KG +  +  +A+ RD   + NP  F PERF   N   +GR+ +  +PF +G R C G   A+     +L  ++  F
Sbjct:  330 GHDTTAAAINWSLYLLGCNPEVQQKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFA-RSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERFFPENA--QGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHF 488          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2F5_GORGO (Cytochrome P450 2F5 OS=Gorilla gorilla gorilla GN=CYP2F5 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 47/165 (28.48%), Postives = 71/165 (43.03%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            +L   GT+T  +TL +A   L++ P                             Y  AV+ E  R    +P+ LP +   D    GF++PKG  +      +  D   +  P  F PE FL +N  FK ++   +PF +GRR+C G  LA   L L L +++ SF
Sbjct:  294 NLLFGGTETVGTTLRYAFLALMKYPKVQARVQEEIDLVVGRARLPALKDRAAMPYTDAVIHEVQRFADIIPMSLPHRVTRDTAFRGFLIPKGTDIITLLNTVHYDPSQFLTPQEFNPEHFLDANQSFK-KSPAFMPFSAGRRLCLGESLARMELFLYLTAILQSF 457          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2F2_MOUSE (Cytochrome P450 2F2 OS=Mus musculus GN=Cyp2f2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 49/178 (27.53%), Postives = 78/178 (43.82%), Query Frame = -1
Query:   19 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK--LEDENMDM 465
            +L   GT+T  +TL  A   L++ P                             Y  AV+ E  R    +P+ LP +   D    GF++PKG  V      +  D   ++ P  F PE FL  N  FK ++   +PF +GRR+C G PLA   L +   S++ +F  +  ++ E++D+
Sbjct:  294 NLLFGGTETVGTTLRHAFLILMKYPKVQARVQEEIDRVVGRSRMPTLEDRTSMPYTDAVIHEVQRFADVIPMNLPHRVTRDTPFRGFLIPKGTDVITLLNTVHYDSDQFKTPQEFNPEHFLDDNHSFK-KSPAFMPFSAGRRLCLGEPLARMELFIYFTSILQNFTLQPLVDPEDIDL 470          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CU_RABIT (Cytochrome P450 2C30 OS=Oryctolagus cuniculus GN=CYP2C30 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 47/168 (27.98%), Postives = 79/168 (47.02%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            D+F AG+ TTSST+++ +  L++ P+                            Y  AV+ E  R    VP  +P     D++  G+++PKG  +  +  ++  DE  + NP  F P  FL ++ +FK  ++  +PF  G+R C G  LA   L L+L +++  F  K
Sbjct:  292 DVFDAGSQTTSSTMQFGLLLLMKHPEIAAKVQEEIERVIGRDRSPCMQDRSCMPYTDAVIHEIQRYIDMVPNNVPHAVTQDIQFRGYLIPKGTHILPSLTSVLYDEKEFPNPEKFDPGHFLDASGNFKKSDY-FLPFSIGKRACAGEGLARMELFLVLTTILQHFTLK 458          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A2_FELCA (Cytochrome P450 1A2 OS=Felis catus GN=CYP1A2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 46/172 (26.74%), Postives = 79/172 (45.93%), Query Frame = -1
Query:   40 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 465
            D+F AG DT ++ + W++  L+ +P+                            YL+A + E  R    +P  +P     D  + GF +P+   VF+N W +  D+  W +P  F PERFL   G+ ++ K  + +++ FG G+R C G  LA   + L L  L+   ++ +
Sbjct:  309 DIFGAGFDTVTTAISWSLMYLVTNPEKQRKIQEELDTVVGRARRPRLSDRLQLPYLEASILEIFRHSSFIPFTVPHSTTRDTTLNGFYIPEKHLVFINQWQVNHDQKVWGDPFEFRPERFLTADGTAIN-KILSEKVMIFGLGKRRCIGEVLAKWEVFLFLAILLQQLEFSV 479          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP6A2_DROME (Cytochrome P450 6a2 OS=Drosophila melanogaster GN=Cyp6a2 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.081e-13
Identity = 54/167 (32.34%), Postives = 78/167 (46.71%), Query Frame = -1
Query:   52 FVAGTDTTSSTLEWAMAELLRSPD----------------------------AYLQAVVKETLRLHPAVPLLLPRKALADVEIAG---FIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 459
            +VAG +T+SST+ + + EL ++ D                             YL  V+ ETLRL+  VP L  RKAL D  + G    ++ KG QV + A A  RDE  + NP +F PERF    +  +  + E +PFG G R C G+        + L  +I+ F
Sbjct:  308 YVAGFETSSSTMSYCLYELAQNQDIQDRLRNEIQTVLEEQEGQLTYESIKAMTYLNQVISETLRLYTLVPHL-ERKALNDYVVPGHEKLVIEKGTQVIIPACAYHRDEDLYPNPETFDPERFSPEKVAAR-ESVEWLPFGDGPRNCIGMRFGQMQARIGLAQIISRF 472          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP27B_RAT (25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial OS=Rattus norvegicus GN=Cyp27b1 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.081e-13
Identity = 52/168 (30.95%), Postives = 76/168 (45.24%), Query Frame = -1
Query:   49 DLFVAGTDTTSSTLEWAMAELLRSPDA-----------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFD 465
            +L +AG DT S+TL WA+ EL R P+                               L+AV+KE LRL+P VP    R    D+ +  +++P+   V +  +A  RD   +  P SF P R+LG         F  +PFG G+R C G  LA   L + L  ++  F+
Sbjct:  306 ELLLAGVDTVSNTLSWALYELSRHPEVQSALHSEITGAVNPGSYAHLQATALSQLPLLKAVIKEVLRLYPVVP-GNSRVPDRDICVGNYVIPQDTLVSLCHYATSRDPAQFREPNSFNPARWLGEGP--APHPFASLPFGFGKRSCIGRRLAELELQMALAQILTHFE 470          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C49A1_DROME (Probable cytochrome P450 49a1 OS=Drosophila melanogaster GN=Cyp49a1 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 4.081e-13
Identity = 53/174 (30.46%), Postives = 73/174 (41.95%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPDA----------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKG--------RNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            DLF+ G DTTS      + +L ++PD                             YL+A VKETLR+ P V +   R   +D  I G+ VPKG  V      +  D   +  P  F+PER+L  + D  G          F  +PFG GRR+C G   A   LH +L  +   +
Sbjct:  385 DLFLVGVDTTSVAASSTIYQLAKNPDKQKKLFDELQKVFPHREADINQNVLEQMPYLRACVKETLRMRPVV-IANGRSLQSDAVINGYHVPKGTHVIFPHLVVSNDPAYFPEPKRFLPERWLKQSTDAAGCPHANQKIHPFVSLPFGFGRRMCVGRRFAEIELHTLLAKIFRKY 557          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3A9_RAT (Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 52/164 (31.71%), Postives = 74/164 (45.12%), Query Frame = -1
Query:   43 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 453
            AG +TTSS L + +  L   PD                            YL  VV ETLRL+P +   L R    DVEI G  +PKG  V +  +A+ +D   W  P  F PERF   N D     +  +PFG+G R C G+  A+  + + L  ++ +F ++
Sbjct:  305 AGYETTSSALSFVLYLLAIHPDIQKKLQDEIDAALPNKAHATYDTLLQMEYLDMVVNETLRLYP-IAGRLERVCKTDVEINGVFIPKGTVVMIPTFALHKDPHYWPEPEEFRPERFSKKNQD-NINPYMYLPFGNGPRNCIGMRFALMNMKVALFRVLQNFSFQ 466          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP315_DROME (Cytochrome P450 315a1, mitochondrial OS=Drosophila melanogaster GN=sad PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 43/159 (27.04%), Postives = 75/159 (47.17%), Query Frame = -1
Query:   31 DLFVAGTDTTSSTLEWAMAELLRSP--------------DAYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDE 465
            DL +A  DTT+ + +WA+  L + P                 +  ++KE+LRL+P  P +  R    D ++ G  + K   V ++ +  GRD   +E P   +PER+     +   ++   +PF  G+R C G  +A++ LH +LG     F+    +E
Sbjct:  337 DLVIAAGDTTAFSSQWALFALSKEPRLQQRLAKERATNDSRLMHGLIKESLRLYPVAPFI-GRYLPQDAQLGGHFIEKDTMVLLSLYTAGRDPSHFEQPERVLPERWCIGETEQVHKSHGSLPFAIGQRSCIGRRVALKQLHSLLGRCAAQFEMSCLNE 494          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP4V2_PONAB3.125e-1330.86Cytochrome P450 4V2 OS=Pongo abelii GN=CYP4V2 PE=2... [more]
CP2F5_GORGO3.125e-1328.48Cytochrome P450 2F5 OS=Gorilla gorilla gorilla GN=... [more]
CP2F2_MOUSE3.125e-1327.53Cytochrome P450 2F2 OS=Mus musculus GN=Cyp2f2 PE=2... [more]
CP2CU_RABIT3.125e-1327.98Cytochrome P450 2C30 OS=Oryctolagus cuniculus GN=C... [more]
CP1A2_FELCA3.125e-1326.74Cytochrome P450 1A2 OS=Felis catus GN=CYP1A2 PE=2 ... [more]
CP6A2_DROME4.081e-1332.34Cytochrome P450 6a2 OS=Drosophila melanogaster GN=... [more]
CP27B_RAT4.081e-1330.9525-hydroxyvitamin D-1 alpha hydroxylase, mitochond... [more]
C49A1_DROME4.081e-1330.46Probable cytochrome P450 49a1 OS=Drosophila melano... [more]
CP3A9_RAT5.330e-1331.71Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9... [more]
CP315_DROME5.330e-1327.04Cytochrome P450 315a1, mitochondrial OS=Drosophila... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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