CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CV_CAPAE (Cytochrome P450 2C31 (Fragment) OS=Capra aegagrus GN=CYP2C31 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 52/182 (28.57%), Postives = 84/182 (46.15%), Query Frame = -1
Query:    7 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK--LEDENMDMEEKF 465
            D+F AGT+TTS TL + +  LL+ P+                            Y  AV+ E  R    VP  LP  A  DV+   +++PKG  +  +  ++  D   + NP  F P  FL  + +FK +    + F +G+R+C G  LA   L L+L S++  F  K  ++ +++D+   F
Sbjct:   87 DVFSAGTETTSLTLRYGLLLLLKHPEVTAKVQEEIDRVVGRNRSPCMQDRSRMPYTDAVLHEIQRYIDLVPSNLPHVATQDVKFREYLIPKGTAILTSLTSVLHDGKEFPNPGQFDPAHFLDESGNFK-KTDHFMAFSAGKRVCVGEGLARMELFLLLVSILQHFTLKPVVDPKHIDIAPSF 267          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2C6_RAT (Cytochrome P450 2C6 OS=Rattus norvegicus GN=Cyp2c6 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 48/168 (28.57%), Postives = 76/168 (45.24%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AGT+TTS+TL +A+  LL+ P+                            Y  A   E  R    +P  LP     D++   +++PKG  +  +  ++  D   + +P  F P  FL  N  FK  ++  +PF +G+R+C G  LA   L L L +++ +F  K
Sbjct:  293 DLFGAGTETTSTTLRYALLLLLKCPEVTAKVQEEIDRVVGKHRSPCMQDRSRMPYTDAHDHEVQRFIDLIPTNLPHAVTCDIKFRNYLIPKGTTIITSLSSVLHDSKEFPDPEIFDPGHFLDGNGKFKKSDY-FMPFSAGKRMCAGEGLARMELFLFLTTILQNFKLK 459          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2AB_RABIT (Cytochrome P450 2A11 OS=Oryctolagus cuniculus GN=CYP2A11 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 46/177 (25.99%), Postives = 80/177 (45.20%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            +LF AGT+T S+T+ +    L++ PD                            Y +AV+ E  R    +P+ L R+   D +   F++PKG +VF    ++ +D   +  P  F P+ FL     FK ++   +PF  G+R C G  LA   L L   +++ +F ++ +    D++
Sbjct:  297 NLFFAGTETVSTTMRYGFLLLMKHPDVEAKVHEEIDRVIGRNRQPKFEDRAKMPYTEAVIHEIQRFTDMIPMGLARRVTRDTKFRDFLLPKGTEVFPMLGSVLKDPKFFSKPREFYPQHFLDEKGQFK-KSDAFMPFSVGKRYCLGEGLARMELFLFFTTIMQNFRFRSQQAPQDID 472          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP255_MOUSE (Cytochrome P450 2C55 OS=Mus musculus GN=Cyp2c55 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 48/177 (27.12%), Postives = 83/177 (46.89%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            D+FVAGT+TT+ TL + +  LL+  +                            Y  A+V E  R    +P  +P  A  +V    + +PKG ++  +  ++  D+  + NP  F P  FL  N +FK  ++  +PF  G+R+C G  LA   L L+L +++ +F+ K   +  D++
Sbjct:  293 DIFVAGTETTNITLRYGLLLLLKHTEVTAKVQAEIDHVIGRHRSPCMQDRTRMPYTDAMVHEIQRYIDLIPNNVPHAATCNVRFRSYFIPKGTELVTSLTSVLHDDKEFPNPEVFDPGHFLDENGNFKKSDY-FMPFSIGKRMCVGEALARTELFLILTTILQNFNLKSLVDTKDID 468          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C4AC2_DROME (Probable cytochrome P450 4ac2 OS=Drosophila melanogaster GN=Cyp4ac2 PE=3 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = -1
Query:   52 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 384
            Y++ V+KE+LRL P+VP +  R+ + +  + G I+PK  Q+ ++ + I RD   + NP  F P+RF   N       F  +PF +G+R C G   AI  + ++L ++I +F
Sbjct:  354 YMECVIKESLRLFPSVPFI-GRRCVEEGVVNGLIMPKNTQINIHLYEIMRDARHFSNPKMFQPDRFFPEN-TVNRHPFAFVPFSAGQRNCIGQKFAILEIKVLLAAVIRNF 462          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP6D5_DROME (Probable cytochrome P450 6d5 OS=Drosophila melanogaster GN=Cyp6d5 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 48/183 (26.23%), Postives = 91/183 (49.73%), Query Frame = -1
Query:    1 FVAGTDTTSSTLEWAMAELLRSPDA----------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEI--AGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDMEEKFGI 459
            +VAG +TT+ST  + + EL ++P+                             YL+A + ET R +PA+PLL  R    D  +  +  ++ KG  + ++   + RDE  + +PL++ PER+L +  D+    +  +PFG G R+C G  +    + + +  ++++FD ++  E  ++E  FG+
Sbjct:  312 YVAGYETTASTTSFTLYELTQNPEVMEKAKEDVRSAIEKHGGKLTYDAISDMKYLEACILETARKYPALPLL-NRICTKDYPVPDSKLVIQKGTPIIISLIGMHRDEEYFPDPLAYKPERYLENGKDYTQAAY--LPFGEGPRMCIGARMGKVNVKIAIAKVLSNFDLEIRKEKCEIE--FGV 489          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3A2_RAT (Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 52/166 (31.33%), Postives = 76/166 (45.78%), Query Frame = -1
Query:   43 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGR--NFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 453
            AG +TTSSTL + +  L   PD                            YL  V+ ETLRL+P +   L R    D+E+ G  +PKG+ V +  +A+  D   W  P  F PERF   N   KG    +  +PFG+G R C G+  A+  + L L  ++ +F ++
Sbjct:  306 AGYETTSSTLSFVLYFLATHPDIQKKLQEEIDGALPSKAPPTYDIVMEMEYLDMVLNETLRLYP-IGNRLERVCKKDIELDGLFIPKGSVVTIPTYALHHDPQHWPKPEEFHPERFSKEN---KGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSFQ 467          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2F3_CAPHI (Cytochrome P450 2F3 OS=Capra hircus GN=CYP2F3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 47/165 (28.48%), Postives = 71/165 (43.03%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            +L   GT+T  +TL  A   L++ P+                            Y  AV+ E  R    +P+ LP +   D    GF +P+G  V      +  D   +  P  F PE FL +N+ FK ++   +PF +GRR+C G  LA   L L L +++ SF
Sbjct:  294 NLLFGGTETVGTTLRHAFRLLMKYPEVQVRVQEEIDRVVGRERLPTVEDRAEMPYTDAVIHEVQRFADIIPMSLPHRVTRDTNFRGFTIPRGTDVITLLNTVHYDPSQFLKPKEFNPEHFLDANMSFK-KSPAFMPFSAGRRLCLGEALARMELFLYLTAILQSF 457          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2F1_HUMAN (Cytochrome P450 2F1 OS=Homo sapiens GN=CYP2F1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 49/165 (29.70%), Postives = 70/165 (42.42%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            +L   GT T S+TL  A   L++ P                             Y  AV+ E  R    +P+ LP +   D    GF++PKG  V      +  D   +  P  F PE FL +N  FK ++   +PF +GRR+C G  LA   L L L +++ SF
Sbjct:  294 NLLFGGTKTVSTTLHHAFLALMKYPKVQARVQEEIDLVVGRARLPALKDRAAMPYTDAVIHEVQRFADIIPMNLPHRVTRDTAFRGFLIPKGTDVITLLNTVHYDPSQFLTPQEFNPEHFLDANQSFK-KSPAFMPFSAGRRLCLGESLARMELFLYLTAILQSF 457          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2E1_MACFA (Cytochrome P450 2E1 (Fragment) OS=Macaca fascicularis GN=CYP2E1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 49/168 (29.17%), Postives = 77/168 (45.83%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AGT+TTS+TL + +  L++ P+                            Y+ AVV E  R    VP  LP +A  D    G+I+PKG  +     ++      + +P  F PE  +  +  FK  ++   PF +G+R+C G  LA   L L+L +++  F+ K
Sbjct:  251 DLFFAGTETTSTTLRYGLLILMKYPEIEEKLHEEIDRVIGPSRIPAIKDRQEMPYMHAVVHEIQRFITLVPSNLPHEATRDTIFRGYIIPKGTVIVPTLDSVLYHNQEFPDPEKFKPEHLVDESGKFKYSDY-FKPFSAGKRVCAGEGLARMELFLLLSAILQHFNLK 417          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP2CV_CAPAE5.330e-1328.57Cytochrome P450 2C31 (Fragment) OS=Capra aegagrus ... [more]
CP2C6_RAT5.330e-1328.57Cytochrome P450 2C6 OS=Rattus norvegicus GN=Cyp2c6... [more]
CP2AB_RABIT5.330e-1325.99Cytochrome P450 2A11 OS=Oryctolagus cuniculus GN=C... [more]
CP255_MOUSE5.330e-1327.12Cytochrome P450 2C55 OS=Mus musculus GN=Cyp2c55 PE... [more]
C4AC2_DROME5.330e-1334.23Probable cytochrome P450 4ac2 OS=Drosophila melano... [more]
CP6D5_DROME6.961e-1326.23Probable cytochrome P450 6d5 OS=Drosophila melanog... [more]
CP3A2_RAT6.961e-1331.33Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2... [more]
CP2F3_CAPHI6.961e-1328.48Cytochrome P450 2F3 OS=Capra hircus GN=CYP2F3 PE=2... [more]
CP2F1_HUMAN6.961e-1329.70Cytochrome P450 2F1 OS=Homo sapiens GN=CYP2F1 PE=1... [more]
CP2E1_MACFA6.961e-1329.17Cytochrome P450 2E1 (Fragment) OS=Macaca fascicula... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
back to top