CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C356_FUNHE (Cytochrome P450 3A56 OS=Fundulus heteroclitus GN=cyp3a56 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 41/115 (35.65%), Postives = 61/115 (53.04%), Query Frame = -1
Query:   40 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 384
            YL  V+ E+LRL P +   L R A A VEI G ++PK   V +  W + RD   W  P +F PERF   N D     +  +PFGSG R C G+  A+ ++ L +  ++  + + +
Sbjct:  354 YLDCVINESLRLFP-IAARLERVAKAAVEINGIVIPKDMVVMIPTWPLHRDPEIWPEPEAFKPERFSKKNKD-NIDPYIYMPFGSGPRNCIGMRFALVLIKLAVVEILQQYSFSV 466          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C27C1_HUMAN (Cytochrome P450 27C1 OS=Homo sapiens GN=CYP27C1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 52/179 (29.05%), Postives = 81/179 (45.25%), Query Frame = -1
Query:   10 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDMEEK 465
            ++ +AG DTTS TL W +  L R P+                             ++A++KETLRL P +P    R    D+ I G+++PKG Q+ +  +A    +  +     F PER+L      +  NF  IPFG G R C G  +A   +HL++  L+  F+ K   +   +  K
Sbjct:  176 EMLLAGVDTTSFTLSWTVYILARHPEVQQTVYREIVKNLGERHVPTAADVPKVPLVRALLKETLRLFPVLP-GNGRVTQEDLVIGGYLIPKGTQLALCHYATSYQDENFPRAKEFRPERWLRKGDLDRVDNFGSIPFGHGVRSCIGRRIAELEIHLVVIQLLQHFEIKTSSQTNAVHAK 353          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2C2_RABIT (Cytochrome P450 2C2 OS=Oryctolagus cuniculus GN=CYP2C2 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 43/165 (26.06%), Postives = 80/165 (48.48%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            D+F+AGT+TTS+TL + +  L++ P+                            Y  A V E  R    +P  +P   + +++   +++PKG  V  +  ++  D+  + NP  F P  FL ++ +F+  ++  +PF +G+R+C G  LA   L L L +++ +F
Sbjct:  293 DVFMAGTETTSTTLRYGLLLLMKHPEVIAKVQEEIERVIGRHRSPCMQDRSRMPYTDATVHEIQRYINLIPNNVPHTTICNLKFRNYLIPKGTDVLTSLSSVLHDDKEFPNPDRFDPGHFLDASGNFRKSDY-FMPFSTGKRVCVGEALARMELFLFLTAILQNF 456          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C330_FUNHE (Cytochrome P450 3A30 OS=Fundulus heteroclitus GN=cyp3a30 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 41/115 (35.65%), Postives = 61/115 (53.04%), Query Frame = -1
Query:   40 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL 384
            YL  V+ E+LRL P +   L R A A VEI G ++PK   V +  W + RD   W  P +F PERF   N D     +  +PFGSG R C G+  A+ ++ L +  ++  + + +
Sbjct:  354 YLDCVINESLRLFP-IAARLERVAKAAVEINGVVIPKDMVVMIPTWPLHRDPEIWPEPEAFKPERFSKKNKD-NIDPYIYMPFGSGPRNCIGMRFALVLIKLAVVEILQQYSFSV 466          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP4P2_DROME (Probable cytochrome P450 4p2 OS=Drosophila melanogaster GN=Cyp4p2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 39/112 (34.82%), Postives = 67/112 (59.82%), Query Frame = -1
Query:   52 YLQAVVKETLRLHPAVPLLLPRKALADVEIA-GFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 384
            YL   +KET+RL+P++P++  R+ L + E+  G I+PK +Q+ ++ + I R+   WE+P  F PERFL  N   K   +  IPF +G+R C G   A++ +  ++  ++  F
Sbjct:  376 YLGYFIKETMRLYPSIPIM-GRQTLQETELENGLILPKRSQINIHVFDIHRNPKYWESPEEFRPERFLPQNC-LKRHPYAYIPFSAGQRNCIGQKYAMQEMKTLMVVILKHF 485          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2E1_BOVIN (Cytochrome P450 2E1 OS=Bos taurus GN=CYP2E1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 50/168 (29.76%), Postives = 74/168 (44.05%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DL  AGT+TTS+TL + +  L++ P+                            YL AVV E  R    +P  L  +A  D    G+++PKG  V     ++  D   +  P  F PE FL  N  FK  +     F +G+R+C G  LA   L L+L +++  F+ K
Sbjct:  295 DLLFAGTETTSTTLRYGLLILMKYPEVEEKLHEEIDRVIGPSRIPAVKDRLDMPYLDAVVHEIQRFIDLLPSNLLHEATQDTVFRGYVIPKGTVVIPTLDSVLHDRQEFPEPEKFKPEHFLNENGKFKYSD-HFKAFSAGKRVCVGEGLARMELFLLLAAILQHFNLK 461          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2AD_HUMAN (Cytochrome P450 2A13 OS=Homo sapiens GN=CYP2A13 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 48/177 (27.12%), Postives = 78/177 (44.07%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            +LF AGT+T S+TL +    L++ P+                            Y +AV+ E  R    +P+ L  +   D +   F +PKG +VF    ++ RD   + NP  F P+ FL     FK ++   +PF  G+R C G  LA   L L   +++ +F +K      D++
Sbjct:  297 NLFFAGTETVSTTLRYGFLLLMKHPEVEAKVHEEIDRVIGKNRQPKFEDRAKMPYTEAVIHEIQRFGDMLPMGLAHRVNKDTKFRDFFLPKGTEVFPMLGSVLRDPRFFSNPRDFNPQHFLDKKGQFK-KSDAFVPFSIGKRYCFGEGLARMELFLFFTTIMQNFRFKSPQSPKDID 472          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP341_MOUSE (Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 53/166 (31.93%), Postives = 75/166 (45.18%), Query Frame = -1
Query:   43 AGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGR--NFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 453
            AG +TTSSTL + +  L   PD                            YL  V+ ETLRL+P +   L R    DVE+ G  +PKG+ V + ++A+  D   W  P  F PERF   N   KG    +  +PFG G R C G+  A   + L L  ++ +F ++
Sbjct:  306 AGYETTSSTLSFTLYCLATHPDIQKKLQEEIDETLPNKAPPTYDTVMEMEYLDMVLNETLRLYP-IGNRLERFCKKDVELNGVYIPKGSTVMIPSYALHHDPQHWPEPEEFQPERFSKEN---KGSIDPYLYMPFGIGPRNCIGMRFAFMTMKLALTKVMQNFSFQ 467          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2A8_MESAU (Cytochrome P450 2A8 OS=Mesocricetus auratus GN=CYP2A8 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 49/177 (27.68%), Postives = 76/177 (42.94%), Query Frame = -1
Query:   16 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDME 465
            +LF AGT+T S+T  +    L++ P                             Y +AV+ E  R    VPL LPR    D++   F++PKG  VF    ++ +D   + NP  F P+ F      FK  N   +PF  G+R C G  LA   L +   +++ +F +K      D++
Sbjct:  297 NLFFAGTETVSTTTRYGFLLLMKYPHIAAKMHEEIDQVIGRNRQPKYEDHLKMPYTEAVIYEIQRFVDVVPLGLPRSTTKDIKFRDFLIPKGTDVFPVLSSVLKDPKFFSNPNDFNPQHFSDDKGQFKKSN-AFMPFSVGKRYCFGESLAKMELFIFFTTIMQNFCFKSPQAPQDID 472          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A2_RAT (Cytochrome P450 1A2 OS=Rattus norvegicus GN=Cyp1a2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 48/186 (25.81%), Postives = 84/186 (45.16%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSN---LDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL-EDENMDMEEKFGI 465
            D+F AG +T ++ + W++  L+  P                             YL+A + E  R    VP  +P     D  + GF +PK   +F+N W +  DE  W++P  F PERFL ++   +D K  + +++ FG G+R C G   A   + L L  L++  ++ +     +D+   +G+
Sbjct:  311 DIFGAGFETVTTAIFWSILLLVTEPKVQRKIHEELDTVIGRDRQPRLSDRPQLPYLEAFILEIYRYTSFVPFTIPHSTTRDTSLNGFHIPKECCIFINQWQVNHDEKQWKDPFVFRPERFLTNDNTAID-KTLSEKVMLFGLGKRRCIGEIPAKWEVFLFLAILLHQLEFTVPPGVKVDLTPSYGL 495          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
C356_FUNHE9.092e-1335.65Cytochrome P450 3A56 OS=Fundulus heteroclitus GN=c... [more]
C27C1_HUMAN9.092e-1329.05Cytochrome P450 27C1 OS=Homo sapiens GN=CYP27C1 PE... [more]
CP2C2_RABIT1.187e-1226.06Cytochrome P450 2C2 OS=Oryctolagus cuniculus GN=CY... [more]
C330_FUNHE1.187e-1235.65Cytochrome P450 3A30 OS=Fundulus heteroclitus GN=c... [more]
CP4P2_DROME1.551e-1234.82Probable cytochrome P450 4p2 OS=Drosophila melanog... [more]
CP2E1_BOVIN1.551e-1229.76Cytochrome P450 2E1 OS=Bos taurus GN=CYP2E1 PE=2 S... [more]
CP2AD_HUMAN1.551e-1227.12Cytochrome P450 2A13 OS=Homo sapiens GN=CYP2A13 PE... [more]
CP341_MOUSE2.025e-1231.93Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a P... [more]
CP2A8_MESAU2.025e-1227.68Cytochrome P450 2A8 OS=Mesocricetus auratus GN=CYP... [more]
CP1A2_RAT2.025e-1225.81Cytochrome P450 1A2 OS=Rattus norvegicus GN=Cyp1a2... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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