CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP18A_DROME (Cytochrome P450 18a1 OS=Drosophila melanogaster GN=Cyp18a1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 51/171 (29.82%), Postives = 74/171 (43.27%), Query Frame = -1
Query:   34 DLFVAGTDTTSSTLEWAMAELLRSPD------------------------AYL---QAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED 465
            DLF AG +T  +TL W    +LR+P                          YL   ++ + E++R    VPL        DVE+ G+ +P G+ V     ++  D   WE P  F P RF+ +    +   +  IPFG GRR+C G  LA   L L   S ++ FD  L +
Sbjct:  324 DLFSAGMETIKTTLLWINVFMLRNPKEMRRVQDELDQVVGRHRLPTIEDLQYLPITESTILESMRRSSIVPLATTHSPTRDVELNGYTIPAGSHVIPLINSVHMDPNLWEKPEEFRPSRFIDTEGKVRKPEY-FIPFGVGRRMCLGDVLARMELFLFFASFMHCFDIALPE 493          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C90C1_ARATH (Cytochrome P450 90C1 OS=Arabidopsis thaliana GN=ROT3 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 41/121 (33.88%), Postives = 67/121 (55.37%), Query Frame = -1
Query:   25 AYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENM 387
            ++ Q V+ ETLR+   +  +  RKAL DVEI G+++PKG  V  +  ++  DE  ++NP  F P R+   N      +    PFG G+R+CPGL L+   + + L  L+  + W  E++ +
Sbjct:  375 SFTQNVINETLRMANIINGVW-RKALKDVEIKGYLIPKGWCVLASFISVHMDEDIYDNPYQFDPWRWDRIN-GSANSSICFTPFGGGQRLCPGLELSKLEISIFLHHLVTRYSWTAEEDEI 493          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C5133_DICDI (Probable cytochrome P450 513A3 OS=Dictyostelium discoideum GN=cyp513a3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.025e-12
Identity = 49/177 (27.68%), Postives = 79/177 (44.63%), Query Frame = -1
Query:   46 DLFVAGTDTTSSTLEWAMAELLRSPDA-------------------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW 465
            D+  AGTDT+++TL  A+ EL+ + +                                      Y+  ++KET R HP   L LP     DVEI G+ +  G  +  N ++  R +  +++P  F+PERF  S+     +N  LI FG G R C G  LA   +  ++ +L+N + +
Sbjct:  289 DIISAGTDTSANTLVMALIELINNQEIQSKAFSSIRSSCLNDSNDDDDDDEIVITHSKYRSLLPYISMIIKETFRKHPIALLGLPHVTTEDVEIDGYKIEAGTYIIQNIFSSHRSDKIFQSPNEFIPERFFESS-----QNQGLIHFGLGVRDCVGKSLAECEIFTLIATLLNRYQF 460          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP4V3_RAT (Cytochrome P450 4V3 OS=Rattus norvegicus GN=Cyp4v3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.645e-12
Identity = 47/162 (29.01%), Postives = 75/162 (46.30%), Query Frame = -1
Query:   52 GTDTTSSTLEWAMAELLRSPDA----------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRN-FELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 450
            G DTT++ + W++  L  +P+                             YL  V+KETLR+ P+VPL   R    D E+AG+ + KG +  +  +A+ RD   + +P  F PERF   N   +GR+ +  +PF +G R C G   A+     +L  ++  F
Sbjct:  330 GHDTTAAAINWSLYLLGSNPEVQRKVDKELDDVFGRSHRPVTLEDLKKLKYLDCVIKETLRVFPSVPLFA-RSLSEDCEVAGYKISKGTEAVIIPYALHRDPRYFPDPEEFQPERFFPEN--SQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILACILREF 488          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A4_CHICK (Cytochrome P450 1A4 OS=Gallus gallus GN=CYP1A4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.645e-12
Identity = 54/186 (29.03%), Postives = 81/186 (43.55%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAM--------------AEL-------------LRSPDAYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL---GSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL-EDENMDMEEKFGI 465
            DLF AG DT ++ L W M              AEL              R    Y +A + E  R    +P  +P     D  + G+ +PK   VF+N W    DE  W++P SF PERFL   G+ L     +  LI FG G+R C G  +    + L L +++   +  L   + +D+  ++G+
Sbjct:  324 DLFGAGFDTVTTALSWCMMYAALYPHIQKKIQAELDQTIGRERRPRLSDRGMLPYTEAFILEAFRHSSLLPFTIPHCTTKDTVLNGYYIPKDTCVFINQWQANHDEKIWKDPPSFKPERFLNAAGTELSRTEADKVLI-FGLGKRRCIGESIGRWEVFLFLTTILQQLEISLAPGQRVDITPQYGL 508          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: ORDA_ASPPA (O-methylsterigmatocystin oxidoreductase OS=Aspergillus parasiticus GN=ordA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 42/116 (36.21%), Postives = 56/116 (48.28%), Query Frame = -1
Query:   52 RSPDAYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 399
            RS   ++ A+VKE  R HPA PL  P     D    G+++PKGA +  N W    D   + +P+ F PERFL         +     FG GRRICPG  +    L L+    I+ F
Sbjct:  346 RSQLPFIDALVKEVFRWHPASPLGAPHITQEDQIWDGYLLPKGALLLPNIWTFTHDPSVYHDPMVFKPERFLERQSSPPETDPMKFVFGFGRRICPGRFVTDEKLFLIACHAISCF 461          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP4D1_DROSI (Cytochrome P450 4d1 OS=Drosophila simulans GN=Cyp4d1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = -1
Query:   49 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFD 384
            Y+   VKETLR++P+VPLL  RK L D EI G ++P G  + ++   +GR E  +  P SF PERF       K   +  IPF +G R C G   A+  +  ++ +++  ++
Sbjct:  368 YVDLCVKETLRMYPSVPLL-GRKVLEDCEINGKLIPAGTNIGISPLYLGRREELFSEPNSFKPERFDVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVANVLRHYE 478          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP4D1_DROME (Cytochrome P450 4d1 OS=Drosophila melanogaster GN=Cyp4d1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = -1
Query:   49 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFD 384
            Y+   VKETLR++P+VPLL  RK L D EI G ++P G  + ++   +GR E  +  P SF PERF       K   +  IPF +G R C G   A+  +  ++ +++  ++
Sbjct:  368 YVDLCVKETLRMYPSVPLL-GRKVLEDCEINGKLIPAGTNIGISPLYLGRREELFSEPNSFKPERFDVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVANVLRHYE 478          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2AC_MOUSE (Cytochrome P450 2A12 OS=Mus musculus GN=Cyp2a12 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 50/181 (27.62%), Postives = 81/181 (44.75%), Query Frame = -1
Query:   13 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFEL---IPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDMEE 465
            +LF AG++T SSTL +    L++ PD                            Y QAV+ E  R     PL +PR+   +    GF +PK  +VF    ++  D   + +P  F P+ F    LD KG+  ++   +PF +G+R C G  LA   L  +  +++ +F +K   +  D+ E
Sbjct:  295 NLFFAGSETVSSTLRYGFLLLMKHPDVEAKVHEEIDRVIGRNRQPQYEDHMKMPYTQAVINEIQRFSNFAPLGIPRRITKNTSFRGFFLPKATEVFPILGSLMTDPKFFSSPKDFNPQHF----LDDKGQLKKIPAFLPFSTGKRFCLGDSLAKMELFFLFTTILQNFRFKFPRKLEDINE 471          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP1A2_MESAU (Cytochrome P450 1A2 OS=Mesocricetus auratus GN=CYP1A2 PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 48/185 (25.95%), Postives = 81/185 (43.78%), Query Frame = -1
Query:    1 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSN--LDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKL-EDENMDMEEKFGI 465
            DLF AG DT ++ +  ++  L+  P+                            Y++A + E  R    VP  +P     D  + GF +PK   +F+N W +  DE  W++P  F PERFL  N  +  K  + +++ FG G+R C G   A   + L L  L+   ++ +     +D+   +G+
Sbjct:  311 DLFGAGFDTVTTAITLSILLLVTWPNVQRKIHKELDTVIGRDRQPRLSDRLQLPYMEAFILELYRYTSFVPFTIPHSTTRDTSLNGFYIPKDRCIFINQWQVNHDEKQWKDPFVFRPERFLTDNDTVINKTLSEKVMLFGLGKRRCIGEIPAKWEVFLFLAILLQQLEFSVPPGTKVDLTPTYGL 495          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP18A_DROME2.025e-1229.82Cytochrome P450 18a1 OS=Drosophila melanogaster GN... [more]
C90C1_ARATH2.025e-1233.88Cytochrome P450 90C1 OS=Arabidopsis thaliana GN=RO... [more]
C5133_DICDI2.025e-1227.68Probable cytochrome P450 513A3 OS=Dictyostelium di... [more]
CP4V3_RAT2.645e-1229.01Cytochrome P450 4V3 OS=Rattus norvegicus GN=Cyp4v3... [more]
CP1A4_CHICK2.645e-1229.03Cytochrome P450 1A4 OS=Gallus gallus GN=CYP1A4 PE=... [more]
ORDA_ASPPA3.455e-1236.21O-methylsterigmatocystin oxidoreductase OS=Aspergi... [more]
CP4D1_DROSI3.455e-1235.71Cytochrome P450 4d1 OS=Drosophila simulans GN=Cyp4... [more]
CP4D1_DROME3.455e-1235.71Cytochrome P450 4d1 OS=Drosophila melanogaster GN=... [more]
CP2AC_MOUSE3.455e-1227.62Cytochrome P450 2A12 OS=Mus musculus GN=Cyp2a12 PE... [more]
CP1A2_MESAU3.455e-1225.95Cytochrome P450 1A2 OS=Mesocricetus auratus GN=CYP... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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