CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C85A3_SOLLC (Cytochrome P450 85A3 OS=Solanum lycopersicum GN=CYP85A3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 38/114 (33.33%), Postives = 64/114 (56.14%), Query Frame = -1
Query:   43 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 384
            + +AV+ ETLRL   V  +L RK   D+E+ G+++PKG +++V    +  D L + +P +F P R+L +NLD +      + FG G R+CPG  L +  +   L   +  + W+
Sbjct:  332 FTRAVIYETLRLATIVNGVL-RKTTQDMELNGYMIPKGWRIYVYTRELNYDPLIYPDPYTFNPWRWLENNLDHQS---SFLMFGGGTRLCPGKELGVAEISTFLHYFVTRYRWE 441          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C515A_DICDI (Probable cytochrome P450 515A1 OS=Dictyostelium discoideum GN=cyp515a1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 49/174 (28.16%), Postives = 72/174 (41.38%), Query Frame = -1
Query:   28 DLFVAGTDTTSSTLEWAMAELLRSPDA-----------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW-----KLEDEN 465
            D+ VAG  TTS+T++W +  L   P+                        YL +++KETLR+ P  P  LP     D+ I    +PK  QV  N +   R  +       F P+ FL  +      N     F  G R CPG  +A  ++ L+   L  +F +     +L DEN
Sbjct:  305 DIIVAGIVTTSTTMDWMLLYLTNYPNIQEKLFFEINTPNHPLHKDKLQFPYLNSIIKETLRISPPAPFALPHICTDDIVIDDIFIPKNTQVIPNIYGCNRSNIESSESNVFNPDHFLSKD----ELNIGQCAFSFGSRQCPGANVADSIMFLVSTKLYKTFKFERTTTQLNDEN 474          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C4AC1_DROME (Probable cytochrome P450 4ac1 OS=Drosophila melanogaster GN=Cyp4ac1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.455e-12
Identity = 37/111 (33.33%), Postives = 64/111 (57.66%), Query Frame = -1
Query:   52 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 384
            YL+ V+KE+LR+ P+VP +  R+ + +  + G ++PK  Q+ ++ + I RD   +  P  F P+RFL  N       F  +PF +G+R C G   AI  + ++L ++I +F
Sbjct:  367 YLECVIKESLRMFPSVPFI-GRQCVEETVVNGMVMPKDTQISIHIYDIMRDPRHFPKPDLFQPDRFLPEN-TVNRHPFAYVPFSAGQRNCIGQKFAILEMKVLLAAVIRNF 475          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2BB_CANFA (Cytochrome P450 2B11 OS=Canis familiaris GN=CYP2B11 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 49/164 (29.88%), Postives = 73/164 (44.51%), Query Frame = -1
Query:   52 LFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 462
            LF AGT+TTS+TL +    +L+ P                             Y  AV+ E  R    +P+ +P     D+   G+I+PKG +VF    +   D   +E P  F P+ FL +N   K +N   IPF  G+RIC G  +A   L L   +++ +F
Sbjct:  295 LFFAGTETTSTTLRYGFLLMLKYPHIAERIYKEIDQVIGPHRLPSLDDRAKMPYTDAVIHEIQRFGDLLPIGVPHMVTKDICFRGYIIPKGTEVFPILHSALNDPHYFEKPDVFNPDHFLDANGALK-KNEAFIPFSIGKRICLGEGIARMELFLFFTTILQNF 457          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2B4_RABIT (Cytochrome P450 2B4 OS=Oryctolagus cuniculus GN=CYP2B4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 48/164 (29.27%), Postives = 72/164 (43.90%), Query Frame = -1
Query:   52 LFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 462
            LF AGT+TTS+TL +    +L+ P                             Y  AV+ E  RL   +P  +P     D +  G+++PK  +VF    +   D   +E P +F P  FL +N   K RN   +PF  G+RIC G  +A   L L   +++ +F
Sbjct:  295 LFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALK-RNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNF 457          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C13A7_CAEEL (Putative cytochrome P450 CYP13A7 OS=Caenorhabditis elegans GN=cyp-13A7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.512e-12
Identity = 39/122 (31.97%), Postives = 67/122 (54.92%), Query Frame = -1
Query:   25 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLS-FMPERF-LGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENM 384
            YL+ VVKE LRL+P   L+  RK L    + G  +  G  + V+ W++  D   W + ++ F PER+  G  L F    +  +PFG G RIC G+ LA+  + ++L +++ ++ ++   E +
Sbjct:  375 YLECVVKEALRLYPLASLVHNRKCLKTTNVLGMEIEAGTNINVDTWSLHHDPKVWGDDVNEFKPERWESGDELFFAKGGY--LPFGMGPRICIGMRLAMMEMKMLLTNILKNYTFETTPETV 494          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: ORDA_ASPFN (O-methylsterigmatocystin oxidoreductase OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=ordA PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 41/116 (35.34%), Postives = 56/116 (48.28%), Query Frame = -1
Query:   52 RSPDAYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 399
            RS   ++ A+VKE  R HPA PL  P     D    G+++PKGA +  N W    D   + +P+ F PERFL         +     FG GRRICPG  +    L L+    ++ F
Sbjct:  346 RSQLPFIDALVKEVFRWHPASPLGAPHITQEDQIWDGYLLPKGALLLPNIWTFTHDPSVYHDPMVFKPERFLEGKDSPPETDPMKFVFGFGRRICPGRFVTDEKLFLIACHAVSCF 461          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: ORDA_ASPFL (O-methylsterigmatocystin oxidoreductase OS=Aspergillus flavus GN=ordA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 41/116 (35.34%), Postives = 56/116 (48.28%), Query Frame = -1
Query:   52 RSPDAYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 399
            RS   ++ A+VKE  R HPA PL  P     D    G+++PKGA +  N W    D   + +P+ F PERFL         +     FG GRRICPG  +    L L+    ++ F
Sbjct:  346 RSQLPFIDALVKEVFRWHPASPLGAPHITQEDQIWDGYLLPKGALLLPNIWTFTHDPSVYHDPMVFKPERFLEGKDSPPETDPMKFVFGFGRRICPGRFVTDEKLFLIACHAVSCF 461          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP4V3_MOUSE (Cytochrome P450 4V3 OS=Mus musculus GN=Cyp4v3 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 47/162 (29.01%), Postives = 74/162 (45.68%), Query Frame = -1
Query:   52 GTDTTSSTLEWAMAELLRSPDA----------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRN-FELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 450
            G DTT++ + W++  L  +P+                             YL  V+KETLR+ P+VPL   R    D E+ G+ V KG +  +  +A+ RD   + +P  F PERF   N   +GR+ +  +PF +G R C G   A+     +L  ++  F
Sbjct:  330 GHDTTAAAINWSLYLLGTNPEVQRKVDQELDEVFGRSHRPVTLEDLKKLKYLDCVIKETLRVFPSVPLFA-RSLSEDCEVGGYKVTKGTEAIIIPYALHRDPRYFPDPEEFRPERFFPEN--SQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILACILRQF 488          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3AJ_CAPAE (Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus GN=CYP3A19 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 52/163 (31.90%), Postives = 73/163 (44.79%), Query Frame = -1
Query:   46 GTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRN-FELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW 450
            G +TTS++L + + EL   PD                            YL  VV ETLR+ P +   L R    DVEI G  +PKG  V V  + +  +   W  P  F PERF   N D  G N +  +PFG+G R C G+  A+  + L L  ++ +F +
Sbjct:   17 GYETTSTSLSFIIYELATHPDVQQKLQEEIDATFPNKAPPTYDALVQMEYLDMVVNETLRMFP-IAGRLERLCKKDVEIHGVSIPKGTTVMVPLFVLHNNPEFWPEPEEFRPERFSKKNKD--GINPYVYLPFGTGPRNCVGMRFALMNIKLALVRILQNFSF 176          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
C85A3_SOLLC3.455e-1233.33Cytochrome P450 85A3 OS=Solanum lycopersicum GN=CY... [more]
C515A_DICDI3.455e-1228.16Probable cytochrome P450 515A1 OS=Dictyostelium di... [more]
C4AC1_DROME3.455e-1233.33Probable cytochrome P450 4ac1 OS=Drosophila melano... [more]
CP2BB_CANFA4.512e-1229.88Cytochrome P450 2B11 OS=Canis familiaris GN=CYP2B1... [more]
CP2B4_RABIT4.512e-1229.27Cytochrome P450 2B4 OS=Oryctolagus cuniculus GN=CY... [more]
C13A7_CAEEL4.512e-1231.97Putative cytochrome P450 CYP13A7 OS=Caenorhabditis... [more]
ORDA_ASPFN5.893e-1235.34O-methylsterigmatocystin oxidoreductase OS=Aspergi... [more]
ORDA_ASPFL5.893e-1235.34O-methylsterigmatocystin oxidoreductase OS=Aspergi... [more]
CP4V3_MOUSE5.893e-1229.01Cytochrome P450 4V3 OS=Mus musculus GN=Cyp4v3 PE=1... [more]
CP3AJ_CAPAE5.893e-1231.90Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
back to top