CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CE_RABIT (Cytochrome P450 2C14 OS=Oryctolagus cuniculus GN=CYP2C14 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 46/168 (27.38%), Postives = 76/168 (45.24%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            D+F AGT+TTS+TL + +  L++ P+                            Y  A V E  R    VP  +P     +V+   + +PKG  V  +  ++  D   +  P  F P  FL ++ +FK  ++  +PF +G+R+C G  LA   L L L +++ +F  K
Sbjct:  293 DVFAAGTETTSTTLRYGLLLLMKHPEVTAKVQEEIERVIGRHRSPCMQDRSRMPYTDATVHEIQRYINLVPNNVPHATTCNVKFRNYFIPKGTAVLTSLTSVLHDNQEFLKPDKFDPGHFLDASGNFKKSDY-FMPFSTGKRVCMGEALARMELFLFLTAILQNFTLK 459          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP24A_HUMAN (1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial OS=Homo sapiens GN=CYP24A1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.893e-12
Identity = 50/171 (29.24%), Postives = 79/171 (46.20%), Query Frame = -1
Query:   34 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLED 465
            +L +A  +TT+++L W +  L R+P                             YL+A +KE++RL P+VP        A V +  + +PKG  + +N   +G  E  +E+   F PER+L      K   F  +PFG G+R+C G  LA   LHL L  ++  +D +  D
Sbjct:  322 ELQLAAVETTANSLMWILYNLSRNPQVQQKLLKEIQSVLPENQVPRAEDLRNMPYLKACLKESMRLTPSVPFTTRTLDKATV-LGEYALPKGTVLMLNTQVLGSSEDNFEDSSQFRPERWLQEKE--KINPFAHLPFGVGKRMCIGRRLAELQLHLALCWIVRKYDIQATD 489          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP312_DROME (Probable cytochrome P450 312a1 OS=Drosophila melanogaster GN=Cyp312a1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12
Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = -1
Query:   52 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERF-LGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 384
            +L+A +KETLR++P+ PL   RKA A+  I  F +PKG+ V ++   +GR +  + +P+ F P+R+ +G+    +   F  IPF +G R C G   A+ ML ++L  L+ +F
Sbjct:  368 FLEACIKETLRMYPSGPLTA-RKATANCTINDFFIPKGSDVIISPIYMGRCKDFFPDPMVFKPDRWAIGAEPKIEATTF--IPFMAGARSCMGQRYAMVMLKMVLAHLLRNF 476          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP24A_RAT (1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial OS=Rattus norvegicus GN=Cyp24a1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12
Identity = 51/167 (30.54%), Postives = 80/167 (47.90%), Query Frame = -1
Query:   49 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAG-FIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFD 465
            +L +A  +TT+++L W +  L R+P A                           YL+A +KE++RL P+VP     + L    + G + +PKG  + +N   +G  E  +E+   F PER+L    + K   F  +PFG G+R+C G  LA   LHL L  +I  +D
Sbjct:  322 ELQLAAVETTANSLMWILYNLSRNPQAQRRLLQEVQSVLPDNQTPRAEDLRNMPYLKACLKESMRLTPSVPFTT--RTLDKPTVLGEYALPKGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQK--EKKINPFAHLPFGIGKRMCIGRRLAELQLHLALCWIIQKYD 484          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C97B1_PEA (Cytochrome P450 97B1 OS=Pisum sativum GN=CYP97B1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12
Identity = 49/177 (27.68%), Postives = 76/177 (42.94%), Query Frame = -1
Query:   94 LFVAGTDTTSSTLEWAMAELLRSPDA--------------------------YLQAVVKETLRLHPAVPLLLPRKALADV-------EIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFL--GSNLDFKG-------------------RNFELIPFGSGRRICPGLPLAI 462
            + +AG +TT++ L WA+  L ++PD                           Y++ +V ETLRL+P  PLL+ R    DV       +  G+ +P G  VF++ + + R    W+ P  F PERFL   +N + +G                    +F  +PFG G R C G   A+
Sbjct:  359 MLIAGHETTAAVLTWAVFLLAQNPDKMKKAQAEVDLVLGMGKPTFELLKKLEYIRLIVVETLRLYPQPPLLIRRSLKPDVLPGGHKGDKDGYTIPAGTDVFISVYNLHRSPYFWDRPNDFEPERFLVQNNNEEVEGWAGFDPSRSPGALYPNEIISDFAFLPFGGGPRKCVGDQFAL 535          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C4AC3_DROME (Probable cytochrome P450 4ac3 OS=Drosophila melanogaster GN=Cyp4ac3 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12
Identity = 36/111 (32.43%), Postives = 63/111 (56.76%), Query Frame = -1
Query:   52 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 384
            +L+ V+KE+LRL P+ P++  R  + +  + G ++PK AQ+ ++ + I RD   +  P  F+PERFL  N       F  +PF +G R C G    +  + ++L ++I +F
Sbjct:  367 HLECVIKESLRLFPSAPII-GRTCIEESVMNGLVLPKNAQISIHIYDIMRDARHFPKPNQFLPERFLPEN-SVNRHPFAFVPFSAGPRNCIGQKFGVLEIKVLLAAVIRNF 475          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2M1_ONCMY (Cytochrome P450 2M1 OS=Oncorhynchus mykiss GN=cyp2m1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.005e-11
Identity = 50/163 (30.67%), Postives = 69/163 (42.33%), Query Frame = -1
Query:   52 LFVAGTDTTSSTLEWAMAELLRSPDA--------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 462
            LF AGT+TTSSTL  +   +++ P                            Y  AV+ E  R     P  +P K + D E   + +P+G  V     ++  D   ++NP  F PE FL  N  FK +N     FG G+R CPG  LA   L L   S++  F
Sbjct:  301 LFAAGTETTSSTLRQSFLMMIKYPHIQESVQKEIDEVIGSRVPTVDDRVKMPYTDAVIHEVQRYMDLSPTSVPHKVMRDTEFYNYHIPEGTMVLPLLSSVLVDPKLFKNPDEFDPENFLDENGVFK-KNDGFFAFGVGKRACPGEALARVELFLFFTSVLQRF 462          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2B9_MOUSE (Cytochrome P450 2B9 OS=Mus musculus GN=Cyp2b9 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.005e-11
Identity = 46/164 (28.05%), Postives = 74/164 (45.12%), Query Frame = -1
Query:   52 LFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 462
            LF  GT+TTS+TL + +  +L+ P                             Y  AV+ E  R    VP+ LP K + D    G+++PK  +V+    +   D   +E P  F PE+FL +N   K +    +PF +G+RIC G  +A   L +   +++ +F
Sbjct:  295 LFFVGTETTSATLHYGVLLMLKYPHVTEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFSDLVPIGLPHKVIKDTLFRGYLLPKNTEVYPVLSSALHDPQYFEQPDKFNPEQFLDANGALK-KCEAFLPFSTGKRICLGESIARNELFIFFTTILQNF 457          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C513B_DICDI (Probable cytochrome P450 513B1 OS=Dictyostelium discoideum GN=cyp513b1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.005e-11
Identity = 38/118 (32.20%), Postives = 59/118 (50.00%), Query Frame = -1
Query:   46 RSPDAYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW 399
            RS   YL   +KE  R HPA P   P +   +  I G+ + KG  +F N +A  R +  +  P  F+PER+ G        +  LI FG+G R C G  LA   +  ++ S++N +++
Sbjct:  344 RSLIPYLSLALKENYRKHPAAPFGAPHETTQETVIEGYTIAKGTMIFQNIYATQRSDTFYSQPDEFIPERWNGDE-----NSQTLISFGTGIRDCIGKSLAYNEIFTIIASVLNRYEF 456          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP3AP_MOUSE (Cytochrome P450 3A25 OS=Mus musculus GN=Cyp3a25 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.313e-11
Identity = 50/162 (30.86%), Postives = 73/162 (45.06%), Query Frame = -1
Query:   52 GTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGR--NFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 450
            G D TS+++   M EL   PD                            YL  VV E+LRL+P + + L R +  DVEI G  +PKG  V +  + + R+   W  P  F PERF   N   KG    +  +PFG+G R C G+  A+  + L +  ++ +F
Sbjct:  306 GYDATSTSISLIMYELATHPDVQKKLQDEIDRTLPNKAPVTYDALMDMEYLDMVVNESLRLYP-IAIRLERVSKKDVEINGVFIPKGTVVMIPIYPLHRNPEYWPEPQEFCPERFSKEN---KGNIDPYIYMPFGNGPRNCIGMRFALISIKLAVIGVLQNF 463          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP2CE_RABIT5.893e-1227.38Cytochrome P450 2C14 OS=Oryctolagus cuniculus GN=C... [more]
CP24A_HUMAN5.893e-1229.241,25-dihydroxyvitamin D(3) 24-hydroxylase, mitocho... [more]
CP312_DROME7.697e-1236.61Probable cytochrome P450 312a1 OS=Drosophila melan... [more]
CP24A_RAT7.697e-1230.541,25-dihydroxyvitamin D(3) 24-hydroxylase, mitocho... [more]
C97B1_PEA7.697e-1227.68Cytochrome P450 97B1 OS=Pisum sativum GN=CYP97B1 P... [more]
C4AC3_DROME7.697e-1232.43Probable cytochrome P450 4ac3 OS=Drosophila melano... [more]
CP2M1_ONCMY1.005e-1130.67Cytochrome P450 2M1 OS=Oncorhynchus mykiss GN=cyp2... [more]
CP2B9_MOUSE1.005e-1128.05Cytochrome P450 2B9 OS=Mus musculus GN=Cyp2b9 PE=2... [more]
C513B_DICDI1.005e-1132.20Probable cytochrome P450 513B1 OS=Dictyostelium di... [more]
CP3AP_MOUSE1.313e-1130.86Cytochrome P450 3A25 OS=Mus musculus GN=Cyp3a25 PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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