CK937540

Overview
NameCK937540
Unique NameCK937540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2A2_RAT (Cytochrome P450 2A2 OS=Rattus norvegicus GN=Cyp2a2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.313e-11
Identity = 52/176 (29.55%), Postives = 75/176 (42.61%), Query Frame = -1
Query:   28 LFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK----LEDEN 462
            L  AGT + SSTL      L++ PD                            Y QAV+ E  R     PL +PR+ + +    GF +PKG  VF    ++  +   + N   F P+ FL      K +N   +PF  G+R C G  LA   L L+L +++ +F +K    LED N
Sbjct:  296 LLFAGTGSVSSTLYHGFLLLMKHPDVEAKVHEEIERVIGRNRQPQYEDHMKMPYTQAVINEIQRFSNLAPLGIPRRIIKNTTFRGFFLPKGTDVFPIIGSLMTEPKFFPNHKDFNPQHFLDDKGQLK-KNAAFLPFSIGKRFCLGDSLAKMELFLLLTTILQNFRFKFPMNLEDIN 470          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C521A_DICDI (Probable cytochrome P450 521A1 OS=Dictyostelium discoideum GN=cyp521a1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.313e-11
Identity = 40/120 (33.33%), Postives = 62/120 (51.67%), Query Frame = -1
Query:   52 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAW-AIGRDELTWENPLSFMPERFLGSNLDFKGRNFE--------LIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 384
            Y+  ++KE  R+HPA PL +PR A+ D+ I G+ +PKG  VF N + A+       + P    PER++ +    K    +         +PF SG R CPG+  A   L L+  ++I +F
Sbjct:  340 YIDGIIKEISRIHPAGPLSVPRTAINDIMINGYFIPKGCHVFQNTYGAVYNYMKESDEPCKMKPERWIENEKLRKDGKLDPTNDLALISLPFSSGIRNCPGVGFAEYELFLLFSNIILNF 459          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2C1_RABIT (Cytochrome P450 2C1 OS=Oryctolagus cuniculus GN=CYP2C1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 44/165 (26.67%), Postives = 78/165 (47.27%), Query Frame = -1
Query:   52 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 465
            D+F AGT+TTS+TL + +  L++ P+                            Y  A V E  R    +P  +PR    +V+   +++PKG  V  +  ++  ++  + NP  F P  FL ++  F+  ++  +PF +G+R+C G  LA   L L L +++ +F
Sbjct:  293 DVFGAGTETTSTTLRYGLLLLMKHPEVIAKVQEEIERVIGRHRSPCMQDRSRMPYTDATVHEIQRYINLIPNNVPRATTCNVKFRSYLIPKGTAVITSLTSMLYNDKEFPNPDRFDPGHFLDASGKFRKSDY-FMPFSTGKRVCVGEVLARMELFLFLTAILQNF 456          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2B5_RABIT (Cytochrome P450 2B5 OS=Oryctolagus cuniculus GN=CYP2B5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.239e-11
Identity = 48/164 (29.27%), Postives = 71/164 (43.29%), Query Frame = -1
Query:   52 LFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 462
            LF AGT+TTS+TL +    +L+ P                             Y  AV+ E  RL   VP   P     D +  G+++PK  +VF    +   D   +E P +F P  FL ++   K RN   +PF  G+RIC G  +A   L L   +++ +F
Sbjct:  295 LFFAGTETTSTTLRYGFLLMLKYPHVTERVQKEIEQVIGSHRPPALDDRAKMPYTDAVIHEIQRLGDLVPFGAPHMVTKDTQFRGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDADGALK-RNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNF 457          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2CD_RAT (Cytochrome P450 2C13, male-specific OS=Rattus norvegicus GN=Cyp2c13 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 48/168 (28.57%), Postives = 73/168 (43.45%), Query Frame = -1
Query:   43 DLFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 465
            DLF AG +T SST+ +A+  L++ P                             Y  A+V E  R     P  L  +   D +   + +PKG  V  +  ++  D   + NP  F P  FL  N +FK  ++  IPF +G+R+C G  LA   L L L +++ +F  K
Sbjct:  293 DLFFAGIETVSSTMRFALLLLMKYPHVTAKVQEEIDHVIGRHRSPCMQDRSHMPYTNAMVHEVQRYIDIGPNGLLHEVTCDTKFRNYFIPKGTAVLTSLTSVLHDSKEFPNPEMFDPGHFLDENGNFKKSDY-FIPFSAGKRMCLGESLARMELFLFLTTILQNFKLK 459          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP2B1_RAT (Cytochrome P450 2B1 OS=Rattus norvegicus GN=Cyp2b1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 45/164 (27.44%), Postives = 75/164 (45.73%), Query Frame = -1
Query:   52 LFVAGTDTTSSTLEWAMAELLRSPDA---------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSF 462
            LF AGT+T+S+TL +    +L+ P                             Y  AV+ E  R    VP+ +P +   D    G+++PK  +V+    +   D   +++P SF PE FL +N   K ++   +PF +G+RIC G  +A   L L   +++ +F
Sbjct:  295 LFFAGTETSSTTLRYGFLLMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRSKMPYTDAVIHEIQRFSDLVPIGVPHRVTKDTMFRGYLLPKNTEVYPILSSALHDPQYFDHPDSFNPEHFLDANGALK-KSEAFMPFSTGKRICLGEGIARNELFLFFTTILQNF 457          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C90A1_ARATH (Cytochrome P450 90A1 OS=Arabidopsis thaliana GN=CYP90A1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 46/130 (35.38%), Postives = 70/130 (53.85%), Query Frame = -1
Query:   46 SSTLEWAMAELLRSPDAYLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDW 435
            S +LEW+  + +     + Q VV ETLR+   +  +  R+A+ DVEI G+ +PKG +VF +  A+  D   +++  +F P R+  SN    G +    PFG G R+CPG  LA   L + L  L+  F W
Sbjct:  318 SYSLEWSDYKSM----PFTQCVVNETLRVANIIGGVF-RRAMTDVEIKGYKIPKGWKVFSSFRAVHLDPNHFKDARTFNPWRWQ-SNSVTTGPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTGFSW 441          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C85A1_ORYSJ (Cytochrome P450 85A1 OS=Oryza sativa subsp. japonica GN=CYP85A1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 39/119 (32.77%), Postives = 64/119 (53.78%), Query Frame = -1
Query:   28 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDEN 384
            + +AV+ ETLRL   V  LL RK   DVE+ G+++PKG +++V    I  D   + +P++F P R+L  N++    +   + FG G R+CPG  +    +   L   +  + W+ E  N
Sbjct:  334 FTRAVIFETLRLATVVNGLL-RKTTQDVEMNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLEKNME---SHPHFMLFGGGSRMCPGKEVGTVEIATFLHYFVTQYRWEEEGNN 448          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: C13A5_CAEEL (Putative cytochrome P450 CYP13A5 OS=Caenorhabditis elegans GN=cyp-13A5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 47/178 (26.40%), Postives = 82/178 (46.07%), Query Frame = -1
Query:   43 QVI*QGFI*QDLFVAGTDTTSSTLEWAMAELLRSPDA--------------------------YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTW-ENPLSFMPERFLGSNLDFKGRNFELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWK 495
            ++I Q F+     +AG DTT+ +L ++   L R P+                           Y++ VVKE LR++P   ++  RK + +  + G  + KG  V V+ W +  D   W E+   F PER+   +  F  +    +PFG G RIC G+ LA+    ++L  ++  + ++
Sbjct:  315 EIIGQLFV---FLLAGYDTTALSLSYSSYLLARHPEIQKKLQEEVDRECPNPEVTFDQISKLKYMECVVKEALRMYPLASIVHNRKCMKETNVLGVQIEKGTNVQVDTWTLHYDPKVWGEDANEFRPERWESGDELFYAKG-GYLPFGMGPRICIGMRLAMMEKKMLLTHILKKYTFE 488          
BLAST of CK937540 vs. ExPASy Swiss-Prot
Match: CP4C3_DROME (Cytochrome P450 4c3 OS=Drosophila melanogaster GN=Cyp4c3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = -1
Query:   19 YLQAVVKETLRLHPAVPLLLPRKALADVEIAGFIVPKGAQVFVNAWAIGRDELTWENPLSFMPERFLGSNLDFKGRN-FELIPFGSGRRICPGLPLAIRMLHLMLGSLINSFDWKLEDENMDM 384
            YL+  +K++LRL P+VP ++ R    DV I G IVP G Q  +  +A+ R+   +  P  F P+ FL  N    GR+ F  IPF +G R C G   AI     ++ +++  +  +  D   D+
Sbjct:  394 YLECCIKDSLRLFPSVP-MMARMVGEDVNIGGKIVPAGTQAIIMTYALHRNPRVFPKPEQFNPDNFLPENC--AGRHPFAYIPFSAGPRNCIGQKFAILEEKAVISTVLRKYKIEAVDRREDL 513          
The following BLAST results are available for this feature:
BLAST of CK937540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 439
Match NameE-valueIdentityDescription
CP2A2_RAT1.313e-1129.55Cytochrome P450 2A2 OS=Rattus norvegicus GN=Cyp2a2... [more]
C521A_DICDI1.313e-1133.33Probable cytochrome P450 521A1 OS=Dictyostelium di... [more]
CP2C1_RABIT2.239e-1126.67Cytochrome P450 2C1 OS=Oryctolagus cuniculus GN=CY... [more]
CP2B5_RABIT2.239e-1129.27Cytochrome P450 2B5 OS=Oryctolagus cuniculus GN=CY... [more]
CP2CD_RAT2.925e-1128.57Cytochrome P450 2C13, male-specific OS=Rattus norv... [more]
CP2B1_RAT2.925e-1127.44Cytochrome P450 2B1 OS=Rattus norvegicus GN=Cyp2b1... [more]
C90A1_ARATH2.925e-1135.38Cytochrome P450 90A1 OS=Arabidopsis thaliana GN=CY... [more]
C85A1_ORYSJ2.925e-1132.77Cytochrome P450 85A1 OS=Oryza sativa subsp. japoni... [more]
C13A5_CAEEL2.925e-1126.40Putative cytochrome P450 CYP13A5 OS=Caenorhabditis... [more]
CP4C3_DROME3.820e-1133.33Cytochrome P450 4c3 OS=Drosophila melanogaster GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_C06 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937540 ID=CK937540; Name=CK937540; organism=Citrus sinensis; type=EST; length=540bp
GATGCCAAATTTTTCTTCCATATCCATGTTCTCATCTTCCAGCTTCCAAT
CAAAGGAGTTAATGAGTGAACCCAACATTAGATGTAACATTCTAATTGCC
AACGGCAAACCAGGACATATTCGCCGGCCGGATCCAAAGGGGATCAGCTC
AAAATTTCTGCCTTTGAAATCGAGATTTGACCCCAAGAATCTCTCAGGCA
TAAAAGAAAGAGGGTTCTCCCATGTGAGTTCATCTCTGCCAATTGCCCAC
GCATTAACAAAAACCTGTGCTCCTTTTGGAACTATGAAGCCCGCAATTTC
TACGTCGGCTAAAGCTTTACGAGGAAGTAACAAGGGAACTGCTGGGTGCA
GCCTCAAGGTTTCTTTGACTACTGCTTGTAGATAAGCATCCGGACTGCGG
AGTAGCTCCGCCATCGCCCATTCCAGTGTGCTTGAAGTGGTGTCAGTCCC
AGCAACAAACAAATCCTGTTATATAAACCCCTGTTAAATCACTTGAAATT
TGTGCAAGCAAAAAGGAGGAAAGAGAAATAAAGAAATATT
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