CK937538

Overview
NameCK937538
Unique NameCK937538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.086e-40
Identity = 75/139 (53.96%), Postives = 95/139 (68.35%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            Y+V+W P ++IFLVD IPIRVFKN E+ GV +P++QPMKIYSSLW ADDWAT+GG VKTDWT APF+A Y++F  + C  C            A         L++    +++WVQ  +MIYNYCTD KRFPQG P+EC
Sbjct:  145 YTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYKSFNDVDC--CSRTSLLNWVTCNANSNSWMWTTLNSNQYGQMKWVQDDYMIYNYCTDFKRFPQGLPTEC 281          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH19_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 19 OS=Arabidopsis thaliana GN=XTH19 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.509e-39
Identity = 75/139 (53.96%), Postives = 93/139 (66.91%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            Y + W PQ +IF VD IPIR F NAES GVPFP  QPM++Y+SLW A+ WATRGGL KTDW+KAPFTAYYRN+    C     K         A  QW  + +LD+  + R++ VQ  +M+YNYC+D KRFP+G P EC
Sbjct:  144 YCITWNPQRIIFTVDGIPIREFMNAESRGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAYYRNYNVEGCVWVNGK-----SVCPANSQWFTQ-KLDSNGQTRMKGVQSKYMVYNYCSDKKRFPRGVPPEC 276          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.692e-39
Identity = 76/143 (53.15%), Postives = 97/143 (67.83%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQW-QPR-DELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSECRQ 425
            YS++W    ++F VD +PIRVFKN++ LGV FP +QPMKIY+SLWNADDWATRGGL KTDW+KAPF A Y+ F     + C +           +R W QP   +LDA   RRLRWV++ + IYNYCTD KR+P   P EC++
Sbjct:  152 YSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFH---IDGCEASVNAKFCDTQGKRWWDQPEFRDLDAAQWRRLRWVRQKYTIYNYCTDTKRYPHISPPECKR 291          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH17_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 17 OS=Arabidopsis thaliana GN=XTH17 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.005e-38
Identity = 73/139 (52.52%), Postives = 94/139 (67.63%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            Y + W PQ +IF VD IPIR FKN E++GVPFP  QPM++Y+SLW A+ WATRGGL KTDW+KAPFTA+YRN+    C     K         A   W  + +LD+  + R++ VQ  +MIYNYCTD +RFP+G P+EC
Sbjct:  149 YCITWNPQRIIFTVDGIPIREFKNPEAIGVPFPTRQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVDGCVWANGK-----SSCSANSPWFTQ-KLDSNGQTRMKGVQSKYMIYNYCTDKRRFPRGVPAEC 281          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.312e-38
Identity = 76/141 (53.90%), Postives = 90/141 (63.83%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFR-AIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSECR 422
            Y+V W P ++IFLVD IPIRVFKN E  GV +P+NQPM+IYSSLW ADDWAT GG VK DW+ APF A YRNF     C+   S +            W     L+     ++ WVQ+ FMIYNYCTD KRFPQG P EC+
Sbjct:  149 YTVHWNPVNIIFLVDGIPIRVFKNNEKNGVAYPKNQPMRIYSSLWEADDWATEGGRVKIDWSNAPFKASYRNFNDQSSCSRTSSSKWVTCEPNSNSWMW---TTLNPAQYGKMMWVQRDFMIYNYCTDFKRFPQGLPKECK 286          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.714e-38
Identity = 76/143 (53.15%), Postives = 96/143 (67.13%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRD--ELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSECRQ 425
            YSV+W    ++F VD++PIRVFKN++ +GV FP NQPMKIYSSLWNADDWATRGGL KT+W KAPF A YR F     + C +           +R W  ++  +LDA   +RL+WV+K + IYNYCTD  RFP   P ECR+
Sbjct:  151 YSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNWEKAPFVASYRGFHV---DGCEASVNAKFCETQGKRWWDQKEFQDLDANQYKRLKWVRKRYTIYNYCTDRVRFPVP-PPECRR 289          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH18_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 18 OS=Arabidopsis thaliana GN=XTH18 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.714e-38
Identity = 72/139 (51.80%), Postives = 93/139 (66.91%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            Y + W PQ +IF VD IPIR FKN+ES+GVPFP  QPM++Y+SLW A+ WATRGGL KTDW+KAPFTA+YRN+    C     K         A   W  + +LD+  + R++ VQ  +M+YNYC D +RFP+G P EC
Sbjct:  149 YCITWNPQRIIFTVDGIPIREFKNSESIGVPFPTKQPMRLYASLWEAEHWATRGGLEKTDWSKAPFTAFYRNYNVEGCVWANGK-----SSCPANSSWFTQ-QLDSNGQTRMKGVQSKYMVYNYCNDKRRFPRGVPVEC 281          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.504e-38
Identity = 79/144 (54.86%), Postives = 93/144 (64.58%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDE---LDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSECRQ 425
            YSV+W    ++F VDNIPIRVFKNA+ LGV FP NQPMK+YSSLWNADDWATRGGL KT+W  APF A YR F    C      +          R W  ++E   LDA   RRL+WV+  + IYNYCTD  RFP   P+ECR+
Sbjct:  153 YSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFIASYRGFHIDGCQASVEAKYCATQG----RMWWDQNEFRDLDAEQYRRLKWVRMKWTIYNYCTDRTRFPV-MPAECRR 291          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.232e-37
Identity = 74/141 (52.48%), Postives = 92/141 (65.25%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPR--DELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            YSV+W    ++  VD++PIR FKN++ LGV FP NQPMKIYSSLW+ADDWATRGGL KTDW+ APFTA Y +F    C    + +          R W  +   +LDA   RRLRWV++ + IYNYCTD KR+P   P EC
Sbjct:  151 YSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTDWSNAPFTASYTSFHVDGC-EAATPQEVQVCNTKGMRWWDQKAFQDLDALQYRRLRWVRQKYTIYNYCTDRKRYPT-LPPEC 289          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH21_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 21 OS=Arabidopsis thaliana GN=XTH21 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.199e-37
Identity = 70/154 (45.45%), Postives = 95/154 (61.69%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRA---------------IPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            YS++W P H++F +D  PIR FKN E LGV +P+NQPM++Y SLWNADDWATRGGLVKT+W++ PF A + N+ +                PC    S          +  +W  +  +D++S++ LRWVQ+ FM+YNYC D KRF  G P EC
Sbjct:  147 YSILWNPSHIVFYIDGKPIREFKNLEVLGVAYPKNQPMRMYGSLWNADDWATRGGLVKTNWSQGPFVASFMNYNSENACVWSIVNGTTTTSPC----SPGDSTSSSSSSTSEWFSQRGMDSSSKKVLRWVQRKFMVYNYCKDKKRFSNGLPVEC 296          
The following BLAST results are available for this feature:
BLAST of CK937538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
XTH13_ARATH9.086e-4053.96Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH19_ARATH4.509e-3953.96Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN7.692e-3953.15Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH17_ARATH1.005e-3852.52Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH14_ARATH1.312e-3853.90Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH5_ARATH1.714e-3853.15Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH18_ARATH1.714e-3851.80Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB8.504e-3854.86Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH_TOBAC3.232e-3752.48Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH21_ARATH7.199e-3745.45Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_E04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937538 ID=CK937538; Name=CK937538; organism=Citrus sinensis; type=EST; length=627bp
CTTACTCCGTCATCTGGAAGCCCCAACACGTCATCTTCTTGGTAGATAAC
ATTCCCATTAGAGTGTTCAAAAATGCTGAATCTCTTGGAGTTCCCTTCCC
TGAAAACCAACCAATGAAGATTTACTCAAGTCTTTGGAATGCTGATGACT
GGGCTACAAGAGGAGGGTTGGTGAAAACTGACTGGACTAAGGCTCCTTTC
ACAGCATATTACCGTAACTTCAGAGCCATTCCCTGTAACAACTGTGGCTC
TAAACGGTCATCAAGCTCCTCAGTTTNNNATGCTCAGCGTCAATGGCAGC
CTAGAGACGAGCTTGATGCCACAAGCAGAAGAAGACTCAGATGGGTTCAG
AAATATTTTATGATTTATAACTATTGCACTGATTTAAAACGATTCCCACA
AGGCTTTCCTTCTGAGTGCAGACAACACTAGCTGAAGTTGATGACTGGGA
CTCTGTGGTTGGTTTTGAGCAGTATTCTTTGTTTTGTAATAAATCTCATT
CTTGTTTCTTTCTTTCTTGTTACTTCGTTTGTTTGATCACTTGAGGTTTT
GTGTGTTTGTATATTTCATTGCATAGAATAAAAGTTTTCTTTCAGTTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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