CK937538

Overview
NameCK937538
Unique NameCK937538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.403e-37
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRD--ELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSECRQ 425
            YS++W    ++F VDNIPIR FKNA+ LGV FP NQPMK+YSSLWNADDWATRGGL KT+W  APF A Y+ F     + C +           +  W  ++  +LDA   RRL+WV+  + IYNYCTD  RFP   P+EC++
Sbjct:  154 YSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFVASYKGFH---IDGCQASVEAKYCATQGRMWWDQKEFRDLDAEQWRRLKWVRMKWTIYNYCTDRTRFPV-MPAECKR 292          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.960e-36
Identity = 75/141 (53.19%), Postives = 92/141 (65.25%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQW-QPR-DELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            YSV+W    ++F VD+ PIRVFKN+  LGV FP NQPMKIY+SLWNADDWATRGGL KTDW+KAPF A Y+ F     + C +           +R W QP   +LDA   ++L WV+  + IYNYCTD KR+ Q  P EC
Sbjct:  150 YSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFH---IDGCEASVNAKFCDTQGKRWWDQPEFRDLDAAQWQKLAWVRNKYTIYNYCTDRKRYSQ-VPPEC 286          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.738e-35
Identity = 70/141 (49.65%), Postives = 90/141 (63.83%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPR--DELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            YSV+W    ++  VD++PIR FKN++ LGV FP NQPMKIYSSLW+ADDWATRGGL KT+W  APFTA Y +F    C    + +          + W  +   +LDA   RRLRWV++ + +YNYCTD  R+P   P EC
Sbjct:  152 YSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWANAPFTASYTSFHVDGC-EAATPQEVQVCNTKGMKWWDQKAFQDLDALQYRRLRWVRQKYTVYNYCTDKARYPVP-PPEC 290          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.704e-34
Identity = 74/143 (51.75%), Postives = 90/143 (62.94%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQW-QPR-DELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSECRQ 425
            YSV+W    + F VD+ PIRVFKN++ LGV +P +QPMK+YSSLWNADDWATRGG  KTDW+KAPF A YR F     + C +            R W QP   +LDA   RRL WV+K   IYNYCTD  R+    P EC++
Sbjct:  151 YSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHV---DGCEASAEAKFCATQGARWWDQPEFQDLDAAQYRRLAWVRKEHTIYNYCTDHDRYAAMAP-ECKR 289          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 2.650e-31
Identity = 64/142 (45.07%), Postives = 87/142 (61.27%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQ--PRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSECR 422
            Y+++W  +H++F VD++PIR +KN E+  + +P +QPM +YS+LW ADDWATRGGL K DW+KAPF AYY++F    C   G               W+      L+A   RR RWV+   M+Y+YCTD  RFP   P ECR
Sbjct:  155 YTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYKDFDIEGCPVPG----PTFCPSNPHNWWEGYAYQSLNAVEARRYRWVRVNHMVYDYCTDRSRFPVP-PPECR 291          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.454e-29
Identity = 65/145 (44.83%), Postives = 84/145 (57.93%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPR---DELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSECRQH 428
            YS++W  + V+F+VD  PIRV KN E  G+PF ++Q M +YSS+WNADDWAT+GGLVKTDW+ APF A Y+ F+   C                Q+ W       EL      +L WV+   MIY+YC D  RFP   P EC+ H
Sbjct:  146 YSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNADDWATQGGLVKTDWSHAPFVASYKEFQIDACEI--PTTTDLSKCNGDQKFWWDEPTVSELSLHQNHQLIWVRANHMIYDYCFDATRFPV-TPLECQHH 287          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.231e-28
Identity = 61/141 (43.26%), Postives = 84/141 (59.57%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQ--PRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            Y++ W    ++F VDN+PIRV+KN E+  VP+P  QPM +YS+LW ADDWATRGG+ K +W++APF AYY++F    C   G           ++  W+     +L     R  RWV+   M+Y+YCTD  RFP   P EC
Sbjct:  154 YAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWSRAPFYAYYKDFDIEGCPVPG----PADCPANSKNWWEGSAYHQLSPVEARSYRWVRVNHMVYDYCTDKSRFPVP-PPEC 289          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH26_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.978e-28
Identity = 59/142 (41.55%), Postives = 83/142 (58.45%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPR---DELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            Y++ W P  V++ VD  PIRVF+N ES G+ +P  Q MK+++SLWNA+DWAT+GG VKT+WT APF A  R ++A  C   GS           +  W       +L A+   +++ ++  FMIY+YC D  RF    P EC
Sbjct:  146 YTIHWNPSEVVWFVDGTPIRVFRNYESEGIAYPNKQGMKVFASLWNAEDWATQGGRVKTNWTLAPFVAEGRRYKARACLWKGSVSIKQCVDPTIRSNWWTSPSFSQLTASQLTKMQKIRDGFMIYDYCKDTNRFKGVMPPEC 287          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.032e-27
Identity = 57/140 (40.71%), Postives = 82/140 (58.57%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC-NNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            Y +IW PQ++IF VD++P+R FK  + L   +P+++PM+++++LW+   WATR G VK DW+ APF   YR +    C NN  +              W  R ELD      + W ++ +M YNYC D  RFPQGFP+EC
Sbjct:  151 YKIIWNPQNIIFQVDDVPVRTFKKYDDLA--YPQSKPMRLHATLWDGSYWATRHGDVKIDWSGAPFVVSYRGYSTNACVNNNPAGGWSSSWCPEGTSAWIHR-ELDGAELGTVAWAERNYMSYNYCADGWRFPQGFPAEC 287          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH8_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 8 OS=Arabidopsis thaliana GN=XTH8 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.821e-27
Identity = 60/145 (41.38%), Postives = 82/145 (56.55%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVP----FPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRD--ELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            YS++W    ++F VD +PIRV+KN++   VP    FP  +PM ++SS+WNADDWATRGGL KTDW KAPF + Y++F    C                +  W   D   L  T +    WVQ+  ++Y+YC D +RFP   P EC
Sbjct:  147 YSILWNNHQLVFFVDRVPIRVYKNSDK--VPNNDFFPNQKPMYLFSSIWNADDWATRGGLEKTDWKKAPFVSSYKDFAVEGCR--WKDPFPACVSTTTENWWDQYDAWHLSKTQKMDYAWVQRNLVVYDYCKDSERFPT-LPWEC 286          
The following BLAST results are available for this feature:
BLAST of CK937538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
XTH4_ARATH9.403e-3751.05Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTHA_PHAAN7.960e-3653.19Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_SOLLC6.738e-3549.65Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT5.704e-3451.75Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH6_ARATH2.650e-3145.07Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH9_ARATH1.454e-2944.83Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH7_ARATH1.231e-2843.26Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH26_ARATH7.978e-2841.55Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ORYSJ3.032e-2740.71Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH8_ARATH8.821e-2741.38Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_E04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937538 ID=CK937538; Name=CK937538; organism=Citrus sinensis; type=EST; length=627bp
CTTACTCCGTCATCTGGAAGCCCCAACACGTCATCTTCTTGGTAGATAAC
ATTCCCATTAGAGTGTTCAAAAATGCTGAATCTCTTGGAGTTCCCTTCCC
TGAAAACCAACCAATGAAGATTTACTCAAGTCTTTGGAATGCTGATGACT
GGGCTACAAGAGGAGGGTTGGTGAAAACTGACTGGACTAAGGCTCCTTTC
ACAGCATATTACCGTAACTTCAGAGCCATTCCCTGTAACAACTGTGGCTC
TAAACGGTCATCAAGCTCCTCAGTTTNNNATGCTCAGCGTCAATGGCAGC
CTAGAGACGAGCTTGATGCCACAAGCAGAAGAAGACTCAGATGGGTTCAG
AAATATTTTATGATTTATAACTATTGCACTGATTTAAAACGATTCCCACA
AGGCTTTCCTTCTGAGTGCAGACAACACTAGCTGAAGTTGATGACTGGGA
CTCTGTGGTTGGTTTTGAGCAGTATTCTTTGTTTTGTAATAAATCTCATT
CTTGTTTCTTTCTTTCTTGTTACTTCGTTTGTTTGATCACTTGAGGTTTT
GTGTGTTTGTATATTTCATTGCATAGAATAAAAGTTTTCTTTCAGTTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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