CK937538

Overview
NameCK937538
Unique NameCK937538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 54/142 (38.03%), Postives = 81/142 (57.04%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSR---RRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            YS++W    ++F+VD IPIR+++N    GV +P  QPM + +SLWN + WATRGG  K DW+K PF A + +++   C   G+          +   W  ++E  + +R   R  +WV+KY +IY+YC D  RF    P EC
Sbjct:  156 YSILWNIHQIVFMVDQIPIRLYRNHGEKGVAYPRLQPMSVQASLWNGESWATRGGHDKIDWSKGPFVASFGDYKIDACIWIGN---TSFCNGESTENWWNKNEFSSLTRVQKRWFKWVRKYHLIYDYCQDYGRFNNKLPKEC 294          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 58/151 (38.41%), Postives = 83/151 (54.97%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC---------NNCGSKRXXXXXXXXAQRQWQPR--DELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSECR 422
            Y ++W P  ++F VD +PIRVFKN +  GV +P ++PM++ +SLWN ++WAT GG  K +W  APF A Y+ F    C         N CGS R            W  R   +L A  ++ +  V+  +M Y+YC+D  R+P   PSECR
Sbjct:  151 YGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYP-SKPMQLVASLWNGENWATSGGKEKINWAYAPFKAQYQGFSDHGCHVNGQSNNANVCGSTRYW----------WNTRTYSQLSANEQKVMENVRAKYMTYDYCSDRPRYPVP-PSECR 289          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH3_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 3 OS=Arabidopsis thaliana GN=XTH3 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.544e-22
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPR---DELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            Y ++W P  ++F VDNIPIRV+KN    GV +P ++PM++ +SLWN DDWAT GG  K +W+ +PF A++R+F    CN  G  R        +   W        L    ++    V+  +M Y+YCTD  ++ Q  P EC
Sbjct:  154 YGLLWNPYQIVFYVDNIPIRVYKNEN--GVSYP-SKPMQVEASLWNGDDWATDGGRTKVNWSYSPFIAHFRDFALSGCNIDG--RSNNVGACESSNYWWNAGNYQRLSGNEQKLYEHVRSKYMNYDYCTDRSKY-QTPPREC 289          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH32_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.446e-21
Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKR 392
            Y+++W P+ +IFLVD+IPIR +    +   P    +PM +Y S+W+A  WAT  G  K D+   PFTA Y NF+A+ C    S R         +     R +  A     +RWVQ + M+YNYC D KR
Sbjct:  168 YAILWSPREIIFLVDDIPIRRYPKKSASTFPL---RPMWLYGSIWDASSWATEDGKYKADYKYQPFTAKYTNFKALGCTAYSSARCYPLSASPYRSGGLTRQQHQA-----MRWVQTHSMVYNYCKDYKR 289          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.104e-20
Identity = 52/146 (35.62%), Postives = 81/146 (55.48%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC------NNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSECR 422
            Y+++W P  ++  VDNIP+RVFKN  S G+ +P ++PM++  SLWN ++WAT GG  K +W+ APF A ++ F    C      N CGS          +        +L  + ++    V++ +M Y+YC+D  RF    PSEC+
Sbjct:  157 YAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYP-SKPMQVVVSLWNGENWATDGGKSKINWSLAPFKANFQGFNNSGCFTNAEKNACGSSAYWWNTGSYS--------KLSDSEQKAYTNVRQKYMNYDYCSDKVRFHVP-PSECK 292          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 44/130 (33.85%), Postives = 67/130 (51.54%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKR 392
            Y+++W P  ++F VD++PIR +        P    +PM +Y S+W+A DWAT  G +K D+   PF A Y+NF+   C    S           + +   R ++ A     L W Q+ F++YNYC D KR
Sbjct:  164 YAILWNPNQIVFFVDDVPIRTYNRKNEAIFP---TRPMWVYGSIWDASDWATENGRIKADYRYQPFVAKYKNFKLAGCTADSSSSCRPPSPAPMRNRGLSRQQMAA-----LTWAQRNFLVYNYCHDPKR 285          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 45/140 (32.14%), Postives = 77/140 (55.00%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQ-RQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            YS++W P  +IF VD++PIR     +++G  +P  +PM +Y+++W+A DWAT GG  K ++  APF A +++F    C+    +             + Q    +++  R  +R  ++ FM Y+YC D  R+P+  P EC
Sbjct:  156 YSILWTPHKIIFWVDDVPIREVIRNDAMGADYPA-KPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLDGCSVDPIQEVPMDCSDSVDFLESQDYSSINSHQRAAMRRFRQRFMYYSYCYDTLRYPEPLP-EC 293          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 42/147 (28.57%), Postives = 71/147 (48.30%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC---NNCGSKRXXXXXXXXAQRQWQPRDELDATSRRR-----LRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            Y++IW   H +FLVDNIP+R F N  +    +P ++PM +Y ++W+  +WAT+GG    ++  APF     +     C   N   +          +     P D  D  +  +     + W ++  M Y+YC+D  R+ +  P+EC
Sbjct:  165 YTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYP-SKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCSVNNGSSTGSGPCTKSGGSISSLDPVDGQDFATLSKNQINAMDWARRKLMFYSYCSDKPRY-KVMPAEC 309          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.943e-14
Identity = 41/139 (29.50%), Postives = 70/139 (50.36%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            YS++W   H+IF VDN+PIR  K    +G  FP ++PM +Y+++W+   WAT GG    ++  AP+ A + +     C     ++        A+   +   E+  + R ++   ++  M Y+YC D  R+     SEC
Sbjct:  155 YSILWSDSHIIFFVDNVPIREVKRTAEMGGHFP-SKPMSLYTTIWDGSKWATNGGKYGVNYKYAPYIARFSDLVLHGCPVDPIEQFPRCDEGAAE-DMRAAQEITPSQRSKMDVFRRRLMTYSYCYDRARYNVAL-SEC 290          
BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14
Identity = 39/131 (29.77%), Postives = 67/131 (51.15%), Query Frame = 3
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCNNCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRF 395
            YS++W   H+IF VDN+PIR  K   S+G  FP  +PM +YS++W+   WAT GG    ++  AP+ + + +     C    +++         Q   +   E+  + R ++   ++  M Y+YC D  R+
Sbjct:  155 YSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPSCKDEAVQ-NLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRY 283          
The following BLAST results are available for this feature:
BLAST of CK937538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
XTH10_ARATH1.965e-2638.03Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH2_ARATH1.192e-2338.41Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH3_ARATH8.544e-2238.03Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH32_ARATH9.446e-2138.46Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_ARATH2.104e-2035.62Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH7.997e-2033.85Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH9.775e-1832.14Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH1.726e-1428.57Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH2.943e-1429.50Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH28_ARATH5.020e-1429.77Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_E04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937538 ID=CK937538; Name=CK937538; organism=Citrus sinensis; type=EST; length=627bp
CTTACTCCGTCATCTGGAAGCCCCAACACGTCATCTTCTTGGTAGATAAC
ATTCCCATTAGAGTGTTCAAAAATGCTGAATCTCTTGGAGTTCCCTTCCC
TGAAAACCAACCAATGAAGATTTACTCAAGTCTTTGGAATGCTGATGACT
GGGCTACAAGAGGAGGGTTGGTGAAAACTGACTGGACTAAGGCTCCTTTC
ACAGCATATTACCGTAACTTCAGAGCCATTCCCTGTAACAACTGTGGCTC
TAAACGGTCATCAAGCTCCTCAGTTTNNNATGCTCAGCGTCAATGGCAGC
CTAGAGACGAGCTTGATGCCACAAGCAGAAGAAGACTCAGATGGGTTCAG
AAATATTTTATGATTTATAACTATTGCACTGATTTAAAACGATTCCCACA
AGGCTTTCCTTCTGAGTGCAGACAACACTAGCTGAAGTTGATGACTGGGA
CTCTGTGGTTGGTTTTGAGCAGTATTCTTTGTTTTGTAATAAATCTCATT
CTTGTTTCTTTCTTTCTTGTTACTTCGTTTGTTTGATCACTTGAGGTTTT
GTGTGTTTGTATATTTCATTGCATAGAATAAAAGTTTTCTTTCAGTTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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