CK937538

Overview
NameCK937538
Unique NameCK937538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK937538 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 44/154 (28.57%), Postives = 71/154 (46.10%), Query Frame = 3 
Query:    3 YSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPCN---------------NCGSKRXXXXXXXXAQRQWQPRDELDATSRRRLRWVQKYFMIYNYCTDLKRFPQGFPSEC 419
            YS++W P  +IF VD++PIR     E +   +P+ +PM +Y+++W+A  WAT GG    D+T +PF + +++     CN               N  +              +       AT+ RR R   + +M Y+YC D  R+    P EC
Sbjct:  164 YSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQ-KPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGCNVSDSFPGENNNNNIGNYNNINCSVSDQFLMSNDYSTISPKQATAMRRFR---ERYMYYSYCYDTIRYSVP-PPEC 312
The following BLAST results are available for this feature:
BLAST of CK937538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
XTH29_ARATH8.564e-1428.57Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_E04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937538 ID=CK937538; Name=CK937538; organism=Citrus sinensis; type=EST; length=627bp
CTTACTCCGTCATCTGGAAGCCCCAACACGTCATCTTCTTGGTAGATAAC
ATTCCCATTAGAGTGTTCAAAAATGCTGAATCTCTTGGAGTTCCCTTCCC
TGAAAACCAACCAATGAAGATTTACTCAAGTCTTTGGAATGCTGATGACT
GGGCTACAAGAGGAGGGTTGGTGAAAACTGACTGGACTAAGGCTCCTTTC
ACAGCATATTACCGTAACTTCAGAGCCATTCCCTGTAACAACTGTGGCTC
TAAACGGTCATCAAGCTCCTCAGTTTNNNATGCTCAGCGTCAATGGCAGC
CTAGAGACGAGCTTGATGCCACAAGCAGAAGAAGACTCAGATGGGTTCAG
AAATATTTTATGATTTATAACTATTGCACTGATTTAAAACGATTCCCACA
AGGCTTTCCTTCTGAGTGCAGACAACACTAGCTGAAGTTGATGACTGGGA
CTCTGTGGTTGGTTTTGAGCAGTATTCTTTGTTTTGTAATAAATCTCATT
CTTGTTTCTTTCTTTCTTGTTACTTCGTTTGTTTGATCACTTGAGGTTTT
GTGTGTTTGTATATTTCATTGCATAGAATAAAAGTTTTCTTTCAGTTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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