CK937536

Overview
NameCK937536
Unique NameCK937536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: S14L1_HUMAN (SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.965e-14
Identity = 43/129 (33.33%), Postives = 78/129 (60.47%), Query Frame = 1
Query:  424 MLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKN 810
            +LRFL+AR F+IDKA+ +  + L WRK+  VD I+E +   ++  +  YY  G+H  DK+GRP+++ RLG++D+  L++    +  +RY +   E+    +    T    R I S T ++D++G+ +++
Sbjct:  280 ILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILETWTPPQV--LQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYVLSVNEERLR-RCEENTKVFGRPISSWTCLVDLEGLNMRH 405          
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: S14L5_XENTR (SEC14-like protein 5 OS=Xenopus tropicalis GN=sec14l1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.106e-13
Identity = 44/129 (34.11%), Postives = 77/129 (59.69%), Query Frame = 1
Query:  424 MLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKN 810
            +LRFL+AR F+++KA+ M  + L WRK+  VD I++ ++   + E   YY  G+H  DK+GRP++I RLG+VD+  L++    +  +R HV    +    +    T    R I S T ++D++G+ +++
Sbjct:  276 ILRFLRARDFNMEKAREMLCQSLSWRKQHQVDYILQTWQPPRVLE--EYYAGGWHYHDKDGRPLYILRLGQVDTKGLVKALGEEAILR-HVLSINEEGQKRCEENTRQFGRPIWSWTCLVDLEGLNMRH 401          
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: S14L5_HUMAN (SEC14-like protein 5 OS=Homo sapiens GN=SEC14L5 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 42/129 (32.56%), Postives = 74/129 (57.36%), Query Frame = 1
Query:  424 MLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKN 810
            +LRFL+A  F +DKA+ M  + L WRK+  VD +++ ++   + E   +Y  G+H  D +GRP++I RLG++D+  LM+    +  +R HV    +    +    T    R I S T +LD++G+ +++
Sbjct:  267 ILRFLRAHDFHLDKAREMLRQSLSWRKQHQVDLLLQTWQPPALLE--EFYAGGWHYQDIDGRPLYILRLGQMDTKGLMKAVGEEALLR-HVLSVNEEGQKRCEGSTRQLGRPISSWTCLLDLEGLNMRH 392          
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: RETM_DROPS (Protein real-time OS=Drosophila pseudoobscura pseudoobscura GN=retm PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.364e-13
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  400 ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIR 687
            ER   Y  +LRFL AR + + +A  M  + LQWRKE  +D+++E  E+ E   V+ ++P G+H  DK+GRP++I RLG +D   L++   M+  +R
Sbjct:  237 ERVPSYQTILRFLSARDWHVSQAFAMLCDSLQWRKEHRMDSLLE--EYTEPAVVVEHFPGGWHHHDKDGRPIYILRLGHMDVKGLLKSLGMEGLLR 330          
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: RETM_DROME (Protein real-time OS=Drosophila melanogaster GN=retm PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 39/137 (28.47%), Postives = 78/137 (56.93%), Query Frame = 1
Query:  400 ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKN 810
            ER   Y  +LRFL AR + + +A  M  + L+WR+E  +D ++ ++    +  V+ ++P G+H +DK+GRPV+I RLG +D   L++   MD  +R  +   E+    K        ++ + + + ++D++G+ +++
Sbjct:  239 ERVPSYQTILRFLAARDWHVSQAYAMLCDSLRWRREHRIDALLAEYSKPAV--VVEHFPGGWHHLDKDGRPVYILRLGHMDVKGLLKSLGMDGLLRLALHICEEGIQ-KINESAERLEKPVLNWSLLVDLEGLSMRH 372          
BLAST of CK937536 vs. ExPASy Swiss-Prot
Match: YN02_CAEEL (CRAL-TRIO domain-containing protein T23G5.2 OS=Caenorhabditis elegans GN=T23G5.2 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 6.711e-11
Identity = 40/134 (29.85%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  409 DDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVLSYYPHGYHGVDKEGRPVHIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKN 810
            +D H+ LRFL+AR FD+ KAK M    + WRK+  VD I+E  E+     +  Y+P  +H  DK GRP++I R G++D+  +++   ++  ++  +   E     +    T      I S + ++D+ G+ +++
Sbjct:  276 NDAHL-LRFLRARDFDVAKAKDMVHASIIWRKQHNVDKILE--EWTRPTVIKQYFPGCWHNSDKAGRPMYILRFGQLDTKGMLRSCGVENLVKLTLSICEDGLQ-RAAEATRKLGTPISSWSLVVDLDGLSMRH 405          
The following BLAST results are available for this feature:
BLAST of CK937536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
S14L1_HUMAN4.965e-1433.33SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE... [more]
S14L5_XENTR1.106e-1334.11SEC14-like protein 5 OS=Xenopus tropicalis GN=sec1... [more]
S14L5_HUMAN4.203e-1332.56SEC14-like protein 5 OS=Homo sapiens GN=SEC14L5 PE... [more]
RETM_DROPS9.364e-1339.58Protein real-time OS=Drosophila pseudoobscura pseu... [more]
RETM_DROME2.086e-1228.47Protein real-time OS=Drosophila melanogaster GN=re... [more]
YN02_CAEEL6.711e-1129.85CRAL-TRIO domain-containing protein T23G5.2 OS=Cae... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_D12 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937536 ID=CK937536; Name=CK937536; organism=Citrus sinensis; type=EST; length=838bp
GGGGGATCGATCGATCGATTGTTTGACCGATCCATTCATTGCTGAAAGCG
CAGAGTGTCAGTGCCGCGTTTCCCTCTCACGCGCCACCGAGAGATGTCGG
GTCCTCTCGATCGGTTCGCTAGGCCTTGTTTTGAGGGATTCTCAGGAAGT
GATGAGAGGAGAGAAAGGAAATCTGATTTTGAGAACTCTGAGGATGAAAG
GCGGACAAGGATTGGGTCTCTGAAGAAGAAAGCCTTAAATGCATCCACTA
AGTTCAAGCATTCTCTGAAGAAAAAGAGCAGTAGAAGGAAAAGTGATGGC
CGGGTCAGCTCTGTTTCAATTGAGGATGTCCGTGATGTTGAGGAGCTTCA
GGCTGTTGATGCATTTAGACAATCATTAATTATGGATGAATTGCTGCCTG
AGCGACATGATGATTATCACATGATGTTAAGGTTCTTAAAAGCTAGGAAG
TTTGATATTGACAAAGCAAAGCATATGTGGGCCGAGATGCTTCAATGGAG
GAAGGAATTCGGTGTTGACACTATTATGGAGGATTTTGAGTTCAAAGAAA
TAAATGAAGTTTTGAGTTATTACCCTCATGGTTACCATGGTGTGGACAAG
GAGGGAAGACCTGTTCACATTGAAAGATTGGGAAAAGTTGATTCTAACAA
ACTTATGCAAGTTACCACTATGGATCGATATATAAGGTATCATGTTCAAG
GATTTGAAAAAGCCTTTGCAGTAAAGTTTCCAGCTTGTACAATTGCTGCA
AAGAGGCACATTGATTCGAGCACTTCAATTTTAGATGTTCAAGGCGTGGG
CCTTAAGAATTTTTCCAAGAATGCTCGTGAGCTCATTT
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