CK937534

Overview
NameCK937534
Unique NameCK937534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1A_BOVIN (Serine/threonine-protein phosphatase PP1-alpha catalytic subunit OS=Bos taurus GN=PPP1CA PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 35/45 (77.78%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+E+L+CSF+ILKPAD
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAD 300          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP11_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Nicotiana tabacum GN=NPP1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.158e-14
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA R+LVTIFSAPNY GEFDNAGA++SV+ESL+CSF+ILKP D
Sbjct:  267 EFFAERQLVTIFSAPNYCGEFDNAGAMMSVDESLMCSFQILKPTD 311          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP11_DROME (Serine/threonine-protein phosphatase alpha-1 isoform OS=Drosophila melanogaster GN=Pp1alpha-96A PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.387e-14
Identity = 34/45 (75.56%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+++L+CSF+ILKPAD
Sbjct:  254 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQILKPAD 298          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PPIG_XENTR (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Xenopus tropicalis GN=ppp1cc PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 34/45 (75.56%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+E+L+CSF+ILKPA+
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAE 300          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1_NEUCR (Serine/threonine-protein phosphatase PP1 OS=Neurospora crassa GN=ppp-1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 34/45 (75.56%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFF++R+LVT+FSAPNY GEFDNAGA++SV+ESL+CSF+ILKPA+
Sbjct:  256 EFFSKRQLVTLFSAPNYCGEFDNAGAMMSVDESLLCSFQILKPAE 300          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1_EMENI (Serine/threonine-protein phosphatase PP1 OS=Emericella nidulans GN=bimG PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 34/45 (75.56%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFF++R+LVT+FSAPNY GEFDNAGA++SV+ESL+CSF+ILKPA+
Sbjct:  255 EFFSKRQLVTLFSAPNYCGEFDNAGAMMSVDESLLCSFQILKPAE 299          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1_DICDI (Serine/threonine-protein phosphatase PP1 OS=Dictyostelium discoideum GN=pppB PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 34/45 (75.56%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++ V+E+L+CSF+ILKPAD
Sbjct:  252 EFFAKRQLVTLFSAPNYFGEFDNAGAMMGVDETLMCSFQILKPAD 296          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1G_RAT (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Rattus norvegicus GN=Ppp1cc PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 34/45 (75.56%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+E+L+CSF+ILKPA+
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAE 300          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1G_MOUSE (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Mus musculus GN=Ppp1cc PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 34/45 (75.56%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+E+L+CSF+ILKPA+
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAE 300          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1G_HUMAN (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Homo sapiens GN=PPP1CC PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 34/45 (75.56%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+E+L+CSF+ILKPA+
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAE 300          
The following BLAST results are available for this feature:
BLAST of CK937534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
PP1A_BOVIN2.418e-1477.78Serine/threonine-protein phosphatase PP1-alpha cat... [more]
PP11_TOBAC3.158e-1480.00Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP11_DROME5.387e-1475.56Serine/threonine-protein phosphatase alpha-1 isofo... [more]
PPIG_XENTR7.035e-1475.56Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1_NEUCR7.035e-1475.56Serine/threonine-protein phosphatase PP1 OS=Neuros... [more]
PP1_EMENI7.035e-1475.56Serine/threonine-protein phosphatase PP1 OS=Emeric... [more]
PP1_DICDI7.035e-1475.56Serine/threonine-protein phosphatase PP1 OS=Dictyo... [more]
PP1G_RAT7.035e-1475.56Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_MOUSE7.035e-1475.56Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_HUMAN7.035e-1475.56Serine/threonine-protein phosphatase PP1-gamma cat... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_D09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937534 ID=CK937534; Name=CK937534; organism=Citrus sinensis; type=EST; length=646bp
GGGGAATTTTTTGCTAGACGAAGATTGGTTACAATATTTTCAGCTCCAAA
CTATGGAGGGGAGTTTGACAACGCAGGAGCTCTATTGAGTGTCAACGAAA
GCCTAGTGTGTTCGTTTGAGATATTGAAGCCTGCTGATAAATCGCTTCCA
AGTTCTTCTAATTCAAAGTTGCCTCTTAAAAAGCCCCCTAAAACTGGGAA
GATCTGACGTGCAATAAGGGGTTTCTGGAGATTTATTTTAGTTCGAATAG
GAGATAAAGGAAGCTCGATTCATGCTAAATTTTTTGATTCTGTCAAGATT
ATGGGTTTCGAAAGCAGTGTGCCTTCTTTCAGATCACAGGTTACTGATAA
TTTAATAGCAATCAAAAGTATTATGGGGGAAAAAAAGAATCTGTAAATTA
TTCACAAGCTATCTTCCATGGAGGAACAGAAATCGTTGCATTTCACATCC
TTTGATCTCTTCTTGTAACAGCTGATTGGTGTGAGAATGATTTGAGGATG
GCCTGACTTGATTCTTGTCTACCGAGTATTTGTACATTATATTGTGCAAT
TTGTGCTTGATTGGGTTACTCCTTTTGCCCAATTGTCTATTAATACTCTT
AAAGGCATTTAAAAAAAAAAANNNNAAAAAAAAAAAAAAAAAAAAA
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