CK937534

Overview
NameCK937534
Unique NameCK937534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1G_CANFA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Canis familiaris GN=PPP1CC PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 34/45 (75.56%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+E+L+CSF+ILKPA+
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAE 300          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1G_BOVIN (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit OS=Bos taurus GN=PPP1CC PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 34/45 (75.56%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+E+L+CSF+ILKPA+
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAE 300          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1GB_XENLA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit B OS=Xenopus laevis GN=ppp1cc-B PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 34/45 (75.56%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+E+L+CSF+ILKPA+
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAE 300          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1GA_XENLA (Serine/threonine-protein phosphatase PP1-gamma catalytic subunit A OS=Xenopus laevis GN=ppp1cc-A PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 34/45 (75.56%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+E+L+CSF+ILKPA+
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAE 300          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP15_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 5 OS=Arabidopsis thaliana GN=TOPP5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA R+LVT+FSAPNY GEFDNAGAL+SV+ESL+CSF+ILKP D
Sbjct:  262 EFFADRQLVTMFSAPNYCGEFDNAGALMSVDESLMCSFQILKPVD 306          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP12_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Nicotiana tabacum GN=NPP2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 35/45 (77.78%), Postives = 42/45 (93.33%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA R+LVTIFSAPNY GEFDNAGA++SV+E+L+CSF+ILKP D
Sbjct:  260 EFFAERQLVTIFSAPNYCGEFDNAGAMMSVDENLMCSFQILKPTD 304          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP11_SCHPO (Serine/threonine-protein phosphatase PP1-1 OS=Schizosaccharomyces pombe GN=dis2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 34/45 (75.56%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFF++R+LVT+FSAPNY GEFDNAGA++SV+ESL+CSF+ILKPA+
Sbjct:  255 EFFSKRQLVTLFSAPNYCGEFDNAGAMMSVDESLLCSFQILKPAE 299          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP12_DROME (Serine/threonine-protein phosphatase alpha-2 isoform OS=Drosophila melanogaster GN=Pp1-87B PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.188e-14
Identity = 34/45 (75.56%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R LVT+FSAPNY GEFDNAGA++SV+++L+CSF+ILKPAD
Sbjct:  254 EFFAKRMLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQILKPAD 298          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1_ORYSJ (Serine/threonine-protein phosphatase PP1 OS=Oryza sativa subsp. japonica GN=Os03g0268000 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 35/45 (77.78%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA R+LVTIFSAPNY GEFDNAGA++SV+E+L+CSF+ILKPA+
Sbjct:  267 EFFADRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAE 311          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP12_YEAST (Serine/threonine-protein phosphatase PP1-2 OS=Saccharomyces cerevisiae GN=GLC7 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 34/44 (77.27%), Postives = 43/44 (97.73%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPA 135
            EFF++R+LVT+FSAPNY GEFDNAGA++SV+ESL+CSF+ILKPA
Sbjct:  255 EFFSKRQLVTLFSAPNYCGEFDNAGAMMSVDESLLCSFQILKPA 298          
The following BLAST results are available for this feature:
BLAST of CK937534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
PP1G_CANFA7.035e-1475.56Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1G_BOVIN7.035e-1475.56Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1GB_XENLA7.035e-1475.56Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP1GA_XENLA7.035e-1475.56Serine/threonine-protein phosphatase PP1-gamma cat... [more]
PP15_ARATH7.035e-1480.00Serine/threonine-protein phosphatase PP1 isozyme 5... [more]
PP12_TOBAC7.035e-1477.78Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PP11_SCHPO7.035e-1475.56Serine/threonine-protein phosphatase PP1-1 OS=Schi... [more]
PP12_DROME9.188e-1475.56Serine/threonine-protein phosphatase alpha-2 isofo... [more]
PP1_ORYSJ1.200e-1377.78Serine/threonine-protein phosphatase PP1 OS=Oryza ... [more]
PP12_YEAST1.200e-1377.27Serine/threonine-protein phosphatase PP1-2 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_D09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937534 ID=CK937534; Name=CK937534; organism=Citrus sinensis; type=EST; length=646bp
GGGGAATTTTTTGCTAGACGAAGATTGGTTACAATATTTTCAGCTCCAAA
CTATGGAGGGGAGTTTGACAACGCAGGAGCTCTATTGAGTGTCAACGAAA
GCCTAGTGTGTTCGTTTGAGATATTGAAGCCTGCTGATAAATCGCTTCCA
AGTTCTTCTAATTCAAAGTTGCCTCTTAAAAAGCCCCCTAAAACTGGGAA
GATCTGACGTGCAATAAGGGGTTTCTGGAGATTTATTTTAGTTCGAATAG
GAGATAAAGGAAGCTCGATTCATGCTAAATTTTTTGATTCTGTCAAGATT
ATGGGTTTCGAAAGCAGTGTGCCTTCTTTCAGATCACAGGTTACTGATAA
TTTAATAGCAATCAAAAGTATTATGGGGGAAAAAAAGAATCTGTAAATTA
TTCACAAGCTATCTTCCATGGAGGAACAGAAATCGTTGCATTTCACATCC
TTTGATCTCTTCTTGTAACAGCTGATTGGTGTGAGAATGATTTGAGGATG
GCCTGACTTGATTCTTGTCTACCGAGTATTTGTACATTATATTGTGCAAT
TTGTGCTTGATTGGGTTACTCCTTTTGCCCAATTGTCTATTAATACTCTT
AAAGGCATTTAAAAAAAAAAANNNNAAAAAAAAAAAAAAAAAAAAA
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