CK937534

Overview
NameCK937534
Unique NameCK937534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP12_SCHPO (Serine/threonine-protein phosphatase PP1-2 OS=Schizosaccharomyces pombe GN=sds21 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFF +R+LVTIFSAPNY GEFDN GA++SVNE L+CSF+ILKPA+
Sbjct:  252 EFFGKRQLVTIFSAPNYCGEFDNVGAMMSVNEDLLCSFQILKPAE 296          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP11_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Arabidopsis thaliana GN=TOPP1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 33/45 (73.33%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA R+LVT+FSAPNY GEFDNAGA++S++ESL+CSF+ILKP++
Sbjct:  268 EFFAERQLVTVFSAPNYCGEFDNAGAMMSIDESLMCSFQILKPSE 312          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: GLC7B_CAEEL (Serine/threonine-protein phosphatase PP1-beta OS=Caenorhabditis elegans GN=gsp-2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 33/45 (73.33%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAG++++V+E+L+CSF+ILKPAD
Sbjct:  255 EFFAKRQLVTLFSAPNYCGEFDNAGSMMTVDETLMCSFQILKPAD 299          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: GLC7B_CAEBR (Serine/threonine-protein phosphatase PP1-beta OS=Caenorhabditis briggsae GN=gsp-2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 33/45 (73.33%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAG++++V+E+L+CSF+ILKPAD
Sbjct:  255 EFFAKRQLVTLFSAPNYCGEFDNAGSMMTVDETLMCSFQILKPAD 299          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP14_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 4 OS=Arabidopsis thaliana GN=TOPP4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.567e-13
Identity = 34/45 (75.56%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA R+LVT+FSAPNY GEFDNAGA++SV+E+L+CSF+ILKPA+
Sbjct:  266 EFFADRQLVTVFSAPNYCGEFDNAGAMMSVDENLMCSFQILKPAE 310          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP12_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 2 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 33/45 (73.33%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGAL+SV+++L+CSF+ILKP++
Sbjct:  253 EFFAKRQLVTLFSAPNYCGEFDNAGALMSVDDTLMCSFQILKPSE 297          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP11_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 33/45 (73.33%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGAL+SV+++L+CSF+ILKP++
Sbjct:  253 EFFAKRQLVTLFSAPNYCGEFDNAGALMSVDDTLMCSFQILKPSE 297          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1_BRAOL (Serine/threonine-protein phosphatase PP1 OS=Brassica oleracea GN=PP1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.673e-13
Identity = 32/45 (71.11%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA R++VT+FSAPNY GEFDNAGA++S++ESL+CSF+ILKP++
Sbjct:  270 EFFAERQVVTVFSAPNYCGEFDNAGAMMSIDESLMCSFQILKPSE 314          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1_MEDVA (Serine/threonine-protein phosphatase PP1 OS=Medicago varia GN=PP1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.491e-13
Identity = 33/45 (73.33%), Postives = 42/45 (93.33%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV++SL CSF+ILK +D
Sbjct:  253 EFFAKRKLVTVFSAPNYCGEFDNAGAMMSVDDSLTCSFQILKSSD 297          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1_MAIZE (Serine/threonine-protein phosphatase PP1 OS=Zea mays GN=PP1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.491e-13
Identity = 34/44 (77.27%), Postives = 42/44 (95.45%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPA 135
            EFFA R+LVTIFSAPNY GEFDNAGA++SV+++L+CSF+ILKPA
Sbjct:  253 EFFASRQLVTIFSAPNYCGEFDNAGAMMSVDDTLMCSFQILKPA 296          
The following BLAST results are available for this feature:
BLAST of CK937534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
PP12_SCHPO1.200e-1375.56Serine/threonine-protein phosphatase PP1-2 OS=Schi... [more]
PP11_ARATH1.200e-1373.33Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
GLC7B_CAEEL1.200e-1373.33Serine/threonine-protein phosphatase PP1-beta OS=C... [more]
GLC7B_CAEBR1.200e-1373.33Serine/threonine-protein phosphatase PP1-beta OS=C... [more]
PP14_ARATH1.567e-1375.56Serine/threonine-protein phosphatase PP1 isozyme 4... [more]
PP12_ACECL2.047e-1373.33Serine/threonine-protein phosphatase PP1 isozyme 2... [more]
PP11_ACECL2.047e-1373.33Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP1_BRAOL2.673e-1371.11Serine/threonine-protein phosphatase PP1 OS=Brassi... [more]
PP1_MEDVA3.491e-1373.33Serine/threonine-protein phosphatase PP1 OS=Medica... [more]
PP1_MAIZE3.491e-1377.27Serine/threonine-protein phosphatase PP1 OS=Zea ma... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_D09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937534 ID=CK937534; Name=CK937534; organism=Citrus sinensis; type=EST; length=646bp
GGGGAATTTTTTGCTAGACGAAGATTGGTTACAATATTTTCAGCTCCAAA
CTATGGAGGGGAGTTTGACAACGCAGGAGCTCTATTGAGTGTCAACGAAA
GCCTAGTGTGTTCGTTTGAGATATTGAAGCCTGCTGATAAATCGCTTCCA
AGTTCTTCTAATTCAAAGTTGCCTCTTAAAAAGCCCCCTAAAACTGGGAA
GATCTGACGTGCAATAAGGGGTTTCTGGAGATTTATTTTAGTTCGAATAG
GAGATAAAGGAAGCTCGATTCATGCTAAATTTTTTGATTCTGTCAAGATT
ATGGGTTTCGAAAGCAGTGTGCCTTCTTTCAGATCACAGGTTACTGATAA
TTTAATAGCAATCAAAAGTATTATGGGGGAAAAAAAGAATCTGTAAATTA
TTCACAAGCTATCTTCCATGGAGGAACAGAAATCGTTGCATTTCACATCC
TTTGATCTCTTCTTGTAACAGCTGATTGGTGTGAGAATGATTTGAGGATG
GCCTGACTTGATTCTTGTCTACCGAGTATTTGTACATTATATTGTGCAAT
TTGTGCTTGATTGGGTTACTCCTTTTGCCCAATTGTCTATTAATACTCTT
AAAGGCATTTAAAAAAAAAAANNNNAAAAAAAAAAAAAAAAAAAAA
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