CK937534

Overview
NameCK937534
Unique NameCK937534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1B_XENTR (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Xenopus tropicalis GN=ppp1cb PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 32/45 (71.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAG ++SV+E+L+CSF+ILKP++
Sbjct:  255 EFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 299
[Close]
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1B_XENLA (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Xenopus laevis GN=ppp1cb PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 32/45 (71.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAG ++SV+E+L+CSF+ILKP++
Sbjct:  255 EFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 299
[Close]
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1B_RAT (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Rattus norvegicus GN=Ppp1cb PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 32/45 (71.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAG ++SV+E+L+CSF+ILKP++
Sbjct:  255 EFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 299
[Close]
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1B_RABIT (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Oryctolagus cuniculus GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 32/45 (71.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAG ++SV+E+L+CSF+ILKP++
Sbjct:  255 EFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 299
[Close]
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1B_PONAB (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Pongo abelii GN=PPP1CB PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 32/45 (71.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAG ++SV+E+L+CSF+ILKP++
Sbjct:  255 EFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 299
[Close]
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1B_PIG (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Sus scrofa GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 32/45 (71.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAG ++SV+E+L+CSF+ILKP++
Sbjct:  255 EFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 299
[Close]
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1B_MOUSE (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Mus musculus GN=Ppp1cb PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 32/45 (71.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAG ++SV+E+L+CSF+ILKP++
Sbjct:  255 EFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 299
[Close]
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1B_HUMAN (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Homo sapiens GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 32/45 (71.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAG ++SV+E+L+CSF+ILKP++
Sbjct:  255 EFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 299
[Close]
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1B_CHICK (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Gallus gallus GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 32/45 (71.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAG ++SV+E+L+CSF+ILKP++
Sbjct:  255 EFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 299
[Close]
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1B_BOVIN (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Bos taurus GN=PPP1CB PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 32/45 (71.11%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAG ++SV+E+L+CSF+ILKP++
Sbjct:  255 EFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 299
The following BLAST results are available for this feature:
BLAST of CK937534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
PP1B_XENTR4.560e-1371.11Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_XENLA4.560e-1371.11Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_RAT4.560e-1371.11Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_RABIT4.560e-1371.11Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_PONAB4.560e-1371.11Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_PIG4.560e-1371.11Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_MOUSE4.560e-1371.11Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_HUMAN4.560e-1371.11Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_CHICK4.560e-1371.11Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_BOVIN4.560e-1371.11Serine/threonine-protein phosphatase PP1-beta cata... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_D09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937534 ID=CK937534; Name=CK937534; organism=Citrus sinensis; type=EST; length=646bp
GGGGAATTTTTTGCTAGACGAAGATTGGTTACAATATTTTCAGCTCCAAA
CTATGGAGGGGAGTTTGACAACGCAGGAGCTCTATTGAGTGTCAACGAAA
GCCTAGTGTGTTCGTTTGAGATATTGAAGCCTGCTGATAAATCGCTTCCA
AGTTCTTCTAATTCAAAGTTGCCTCTTAAAAAGCCCCCTAAAACTGGGAA
GATCTGACGTGCAATAAGGGGTTTCTGGAGATTTATTTTAGTTCGAATAG
GAGATAAAGGAAGCTCGATTCATGCTAAATTTTTTGATTCTGTCAAGATT
ATGGGTTTCGAAAGCAGTGTGCCTTCTTTCAGATCACAGGTTACTGATAA
TTTAATAGCAATCAAAAGTATTATGGGGGAAAAAAAGAATCTGTAAATTA
TTCACAAGCTATCTTCCATGGAGGAACAGAAATCGTTGCATTTCACATCC
TTTGATCTCTTCTTGTAACAGCTGATTGGTGTGAGAATGATTTGAGGATG
GCCTGACTTGATTCTTGTCTACCGAGTATTTGTACATTATATTGTGCAAT
TTGTGCTTGATTGGGTTACTCCTTTTGCCCAATTGTCTATTAATACTCTT
AAAGGCATTTAAAAAAAAAAANNNNAAAAAAAAAAAAAAAAAAAAA
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