CK937534

Overview
NameCK937534
Unique NameCK937534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP13_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Nicotiana tabacum GN=NPP3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA   LVTIFSAPNY GEFDNAGA++SV+E+L+CSF+ILKPA+
Sbjct:  253 EFFAESELVTIFSAPNYCGEFDNAGAMMSVDENLLCSFQILKPAE 297          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: GLC7A_CAEEL (Serine/threonine-protein phosphatase PP1-alpha OS=Caenorhabditis elegans GN=gsp-1 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 32/45 (71.11%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAG ++SV+E+L+CSF+ILKP++
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 300          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: GLC7A_CAEBR (Serine/threonine-protein phosphatase PP1-alpha OS=Caenorhabditis briggsae GN=gsp-1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 32/45 (71.11%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAG ++SV+E+L+CSF+ILKP++
Sbjct:  256 EFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 300          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP16_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 6 OS=Arabidopsis thaliana GN=TOPP6 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.956e-13
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVTIFSAPNY GEFDNAGAL+SV++SL CSF+ILK ++
Sbjct:  253 EFFAKRQLVTIFSAPNYCGEFDNAGALMSVDDSLTCSFQILKASE 297          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP13_DROME (Serine/threonine-protein phosphatase alpha-3 isoform OS=Drosophila melanogaster GN=Pp1-13C PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.778e-13
Identity = 32/45 (71.11%), Postives = 42/45 (93.33%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LVT+FSAPNY GEFDNAGA++SV+ +L+CSF+ILKP +
Sbjct:  254 EFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDNTLMCSFQILKPVE 298          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1B_DROME (Serine/threonine-protein phosphatase beta isoform OS=Drosophila melanogaster GN=flw PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.016e-12
Identity = 31/45 (68.89%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFARR+LVT+FSAPNY GEFDNAG +++V+++L+CSF+ILKP++
Sbjct:  255 EFFARRQLVTLFSAPNYCGEFDNAGGMMTVDDTLMCSFQILKPSE 299          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP13_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Arabidopsis thaliana GN=TOPP3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.733e-12
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA R+LVTIFSAPNY GEFDNAGA++SV++SL CSF+ILK ++
Sbjct:  253 EFFANRQLVTIFSAPNYCGEFDNAGAMMSVDDSLTCSFQILKASE 297          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP1B_CANFA (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Canis familiaris GN=PPP1CB PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.263e-12
Identity = 31/45 (68.89%), Postives = 42/45 (93.33%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA+R+LV +FSAPNY GEFDNAG ++SV+E+L+CSF+ILKP++
Sbjct:  255 EFFAKRQLVILFSAPNYCGEFDNAGGMMSVDETLMCSFQILKPSE 299          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PP17_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 7 OS=Arabidopsis thaliana GN=TOPP7 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.860e-12
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFFA ++LVTIFSAPNY GEFDNAGA++SV+E L CSF+ILK  D
Sbjct:  252 EFFANKQLVTIFSAPNYCGEFDNAGAMMSVSEDLTCSFQILKSND 296          
BLAST of CK937534 vs. ExPASy Swiss-Prot
Match: PPZ1_YEAST (Serine/threonine-protein phosphatase PP-Z1 OS=Saccharomyces cerevisiae GN=PPZ1 PE=1 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1
Query:    4 EFFARRRLVTIFSAPNYGGEFDNAGALLSVNESLVCSFEILKPAD 138
            EFF  R LVT+FSAPNY GEFDN GA++SV+E L+CSFE+L P D
Sbjct:  611 EFFNDRSLVTVFSAPNYCGEFDNWGAVMSVSEGLLCSFELLDPLD 655          
The following BLAST results are available for this feature:
BLAST of CK937534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
PP13_TOBAC4.560e-1375.56Serine/threonine-protein phosphatase PP1 isozyme 3... [more]
GLC7A_CAEEL4.560e-1371.11Serine/threonine-protein phosphatase PP1-alpha OS=... [more]
GLC7A_CAEBR4.560e-1371.11Serine/threonine-protein phosphatase PP1-alpha OS=... [more]
PP16_ARATH5.956e-1375.56Serine/threonine-protein phosphatase PP1 isozyme 6... [more]
PP13_DROME7.778e-1371.11Serine/threonine-protein phosphatase alpha-3 isofo... [more]
PP1B_DROME1.016e-1268.89Serine/threonine-protein phosphatase beta isoform ... [more]
PP13_ARATH1.733e-1273.33Serine/threonine-protein phosphatase PP1 isozyme 3... [more]
PP1B_CANFA2.263e-1268.89Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP17_ARATH3.860e-1273.33Serine/threonine-protein phosphatase PP1 isozyme 7... [more]
PPZ1_YEAST7.280e-1168.89Serine/threonine-protein phosphatase PP-Z1 OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004779_D09 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIIF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937534 ID=CK937534; Name=CK937534; organism=Citrus sinensis; type=EST; length=646bp
GGGGAATTTTTTGCTAGACGAAGATTGGTTACAATATTTTCAGCTCCAAA
CTATGGAGGGGAGTTTGACAACGCAGGAGCTCTATTGAGTGTCAACGAAA
GCCTAGTGTGTTCGTTTGAGATATTGAAGCCTGCTGATAAATCGCTTCCA
AGTTCTTCTAATTCAAAGTTGCCTCTTAAAAAGCCCCCTAAAACTGGGAA
GATCTGACGTGCAATAAGGGGTTTCTGGAGATTTATTTTAGTTCGAATAG
GAGATAAAGGAAGCTCGATTCATGCTAAATTTTTTGATTCTGTCAAGATT
ATGGGTTTCGAAAGCAGTGTGCCTTCTTTCAGATCACAGGTTACTGATAA
TTTAATAGCAATCAAAAGTATTATGGGGGAAAAAAAGAATCTGTAAATTA
TTCACAAGCTATCTTCCATGGAGGAACAGAAATCGTTGCATTTCACATCC
TTTGATCTCTTCTTGTAACAGCTGATTGGTGTGAGAATGATTTGAGGATG
GCCTGACTTGATTCTTGTCTACCGAGTATTTGTACATTATATTGTGCAAT
TTGTGCTTGATTGGGTTACTCCTTTTGCCCAATTGTCTATTAATACTCTT
AAAGGCATTTAAAAAAAAAAANNNNAAAAAAAAAAAAAAAAAAAAA
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